BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0078.p (583 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis tra... 904 0.0 gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 370 e-103 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 370 e-103 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 364 e-101 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 361 e-101 >gi|300310584|ref|YP_003774676.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 596 Score = 904 bits (2336), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/604 (78%), Positives = 519/604 (85%), Gaps = 29/604 (4%) Query: 1 MSIKNLSIKAQLAIAVLVLSLLLLALGLSGLLGMSAAVSINRQLSEERIPKTVAADNTLI 60 MSIKNLSIKAQLAIA+LVL+ LL+A+G SGLLGMSAAVSIN QLS+ER+PKTVAADNTLI Sbjct: 1 MSIKNLSIKAQLAIAILVLAALLVAIGASGLLGMSAAVSINAQLSQERLPKTVAADNTLI 60 Query: 61 WIGRQRTSLDQAAMSLDAAWTERMFVMEANARKEALQWWAKYSALPQTDEGKVMLKKVSE 120 WIGRQRTSLDQAA++ D AW ERM+ M+ANARKEALQWW KY+ALPQT+EG+V++KKVS+ Sbjct: 61 WIGRQRTSLDQAALTNDPAWAERMYGMDANARKEALQWWGKYTALPQTEEGRVLVKKVSD 120 Query: 121 GLAATQVELDKFIAAIKSGDRQAIADQARKVGSVYTAMQLDGQALNKYETEQAAESLAAS 180 G+ T+ EL +F IK+GDRQAIADQARKVG++YTAMQLDGQAL+KYETEQAA+S AS Sbjct: 121 GIDKTEQELTRFAEVIKAGDRQAIADQARKVGTIYTAMQLDGQALSKYETEQAAQSAGAS 180 Query: 181 NARYQASRMFSIAAVIGGLLLAFFSWWSLRRAIGEPMQRALRHFDAIANGDLTQPVHVHS 240 ARY+ASR FSI A++ GLLLAF+SWWSLRRAIGEPMQRALRHFDAIA+GDLT+ VHVHS Sbjct: 181 MARYEASRNFSIVAIVAGLLLAFYSWWSLRRAIGEPMQRALRHFDAIASGDLTEAVHVHS 240 Query: 241 KNEMGQLLQGLSRMQESLSRTVRAVRGGSDAIATATREIASGNLDLSARTEQQAASLEET 300 +NEMGQLL+GL RMQESLSRTV+AVR GSDAI+TATREIASGNLDLS+RTEQQAASLEET Sbjct: 241 RNEMGQLLEGLKRMQESLSRTVQAVRSGSDAISTATREIASGNLDLSSRTEQQAASLEET 300 Query: 301 ASSMEELTGTVKHNADNARQATTLAVNASTIAADGNAVVGRVVQTMEEIRESSARITDIV 360 ASSMEELT TVKHNADNARQATTLAVNASTIAADGNAVVGRVVQTMEEIR SSA+ITDIV Sbjct: 301 ASSMEELTSTVKHNADNARQATTLAVNASTIAADGNAVVGRVVQTMEEIRASSAKITDIV 360 Query: 361 SIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSSAAKEIKELIMHSV 420 SIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSSAAKEIKELIMHSV Sbjct: 361 SIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSSAAKEIKELIMHSV 420 Query: 421 ERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSAGIDQVSRAVTQMDEATQ 480 +RVQAGSELVGQAGDTMSDVI AVQRVTDIMSEISAASNEQSAGIDQVS AVTQMDEATQ Sbjct: 421 DRVQAGSELVGQAGDTMSDVINAVQRVTDIMSEISAASNEQSAGIDQVSHAVTQMDEATQ 480 Query: 481 QNAALVEQASAAAKSLEQQAQALMQEVAIFRV-GQGDVVSLRPQVNAQQPAPKAAATPAK 539 QNAALVEQASAAAKSLEQQAQALMQEVAIFRV G G V +P PA A+ K Sbjct: 481 QNAALVEQASAAAKSLEQQAQALMQEVAIFRVNGAGPTV--KP------PAAAASRATVK 532 Query: 540 PVA-------------------ATKPAVPKAVPALKRPALPAAASAKPASR-LPAGDDGD 579 P A P A + A A+AKPA R +PAGD+GD Sbjct: 533 PAAKPAMKPASAAPAAPATPTAPAAPVAKVAPAVKRPALPAAPAAAKPAGRGVPAGDEGD 592 Query: 580 WETF 583 WETF Sbjct: 593 WETF 596 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 370 bits (949), Expect = e-103, Method: Compositional matrix adjust. Identities = 225/410 (54%), Positives = 288/410 (70%), Gaps = 22/410 (5%) Query: 186 ASRMFSIAAVIGG-----LLLAFFSWWSLRRAIGEPMQRALRHFDAIANGDLTQPVHVHS 240 A R + +IGG +L +WW L I P+ A++ +A+GDLT + V S Sbjct: 186 ALRSVTSTTLIGGGAIALMLAVLLAWW-LANNITRPLALAVQLARRVASGDLTARIEVRS 244 Query: 241 KNEMGQLLQGLSRMQESLSRTVRAVRGGSDAIATATREIASGNLDLSARTEQQAASLEET 300 ++E G LL L M ESL R V VR G++ IATA+ EIA+GNLDLS+RTEQQA+SLEET Sbjct: 245 RDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQASSLEET 304 Query: 301 ASSMEELTGTVKHNADNARQATTLAVNASTIAADGNAVVGRVVQTMEEIRESSARITDIV 360 ASSMEELT TV+ N NAR+A +A AS IA+ G VV RVV TMEEI +SS +I DI+ Sbjct: 305 ASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEINDSSRKIVDII 364 Query: 361 SIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSSAAKEIKELIMHSV 420 S+IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS++AAKEIK LI SV Sbjct: 365 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALISDSV 424 Query: 421 ERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSAGIDQVSRAVTQMDEATQ 480 +V++GS LV +AGDTM +++++VQRVT++++EISAA EQ +GI+QVS+AV QMD+ TQ Sbjct: 425 AKVESGSLLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMDQVTQ 484 Query: 481 QNAALVEQASAAAKSLEQQAQALMQEVAIFRVGQGDVVSLRPQVNAQQPAPKAAATPAKP 540 QNAALVEQA+AA++SL++QAQ L Q V++FR+ G + + P +PAP + A Sbjct: 485 QNAALVEQAAAASQSLQEQAQELAQAVSVFRLEAGQALEVAP-----EPAPASVAASRSG 539 Query: 541 V-AATK------PAVPKAVPALKRPALPAAASAKPASRLPAGDDGDWETF 583 V AT+ P P A P+ P PA AS SRL + D +W TF Sbjct: 540 VRPATRSSRLPSPVGPSASPSAS-PMHPAPAS---GSRLSSADADEWVTF 585 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 370 bits (949), Expect = e-103, Method: Compositional matrix adjust. Identities = 251/553 (45%), Positives = 345/553 (62%), Gaps = 43/553 (7%) Query: 3 IKNLSIKAQLAIAVLVLSLLLLALGLSGLLGMSAAVSINR---QLSEERIPKTVAADNTL 59 KNL + +LA + LL + ++ + ++ +INR Q+ +R K A + Sbjct: 5 FKNLKVAVRLAAVFAFIVALLAVVSVTAFIKIN---NINRAIDQIVNDRYLKVRWAFDLR 61 Query: 60 IWIGRQRTSLDQAAMSLDA-AWTERMFVMEANARKEALQWWAKYSALPQTDEGKVMLKKV 118 + Q L A+ ++ E+ F A K+ + K +A T G+ K + Sbjct: 62 DGVNEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKAL 121 Query: 119 SEGLAATQVELDKFIAAIKSGDRQAIADQA--RKVGSVYTAMQLDGQALNKYETEQAAES 176 E A F+A +K+G+ + AD+ RK+ T Q + AL + + Sbjct: 122 DEARIAFDASKADFLALVKAGNSTS-ADEYVLRKI----TDTQNNYLALARAFADSQDAQ 176 Query: 177 LAASNAR--------YQASRMFSIAAVIGGLLLAFFSWWSLRRAIGEPMQRALRHFDAIA 228 L A A+ + + S+AAV+ ++L + + R+I +P+ A+R + +A Sbjct: 177 LQAEGAKAVADGAMAIEVTLACSMAAVLAAIILGYL----MARSIVKPLTEAVRVAENVA 232 Query: 229 NGDLTQPVHVHSKNEMGQLLQGLSRMQESLSRTVRAVRGGSDAIATATREIASGNLDLSA 288 GDLT + HS++E GQL+Q L +M ++L V VR G+++I TA+ EIASGNLDLSA Sbjct: 233 AGDLTTRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSA 292 Query: 289 RTEQQAASLEETASSMEELTGTVKHNADNARQATTLAVNASTIAADGNAVVGRVVQTMEE 348 RTEQQA SLEETAS+MEE+T TV+ NADNARQA +AV+AS IA G +VGRVV TM+E Sbjct: 293 RTEQQAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDE 352 Query: 349 IRESSARITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSSSA 408 I +SS +I DI+ +IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRS++A Sbjct: 353 INQSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAA 412 Query: 409 AKEIKELIMHSVERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSAGIDQV 468 AKEIK LI SV +V+ GS LV QAG TM V+ +V+ VTDI++EISAAS EQS+GI+++ Sbjct: 413 AKEIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEI 472 Query: 469 SRAVTQMDEATQQNAALVEQASAAAKSLEQQAQALMQEVAIFRVGQGDVVSLRPQVNAQQ 528 +RAVTQMDE TQQNAALVEQA+AAAKS+++QA L Q ++IF++ QG Sbjct: 473 NRAVTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQG------------- 519 Query: 529 PAPKAAATPAKPV 541 AA+ PA PV Sbjct: 520 ----AASIPAAPV 528 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 364 bits (934), Expect = e-101, Method: Compositional matrix adjust. Identities = 213/374 (56%), Positives = 265/374 (70%), Gaps = 21/374 (5%) Query: 211 RAIGEPMQRALRHFDAIANGDLTQPVHVHSKNEMGQLLQGLSRMQESLSRTVRAVRGGSD 270 R I P++ A IA GDLT + S +E GQL L+ M SL R V VR G+D Sbjct: 214 RVIATPLRSAGEFAHLIAAGDLTADITARSDDETGQLTAALAAMNTSLRRIVSQVRSGTD 273 Query: 271 AIATATREIASGNLDLSARTEQQAASLEETASSMEELTGTVKHNADNARQATTLAVNAST 330 AIATA+ +I+SGNLDLS+RTE+QA+SLEETAS+MEELT TV+ NA+NARQA LA++AST Sbjct: 274 AIATASGQISSGNLDLSSRTEEQASSLEETASAMEELTSTVRQNAENARQANQLALSAST 333 Query: 331 IAADGNAVVGRVVQTMEEIRESSARITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRG 390 IA +G VV +V++TM I SS +I DI+S+ID IAFQTNILALNAAVEAARAGEQGRG Sbjct: 334 IAEEGGKVVSQVIETMGSIDASSKKIVDIISVIDSIAFQTNILALNAAVEAARAGEQGRG 393 Query: 391 FAVVATEVRALAQRSSSAAKEIKELIMHSVERVQAGSELVGQAGDTMSDVIQAVQRVTDI 450 FAVVATEVR+LAQRS++AAKEIK LI +SV++V GS LV +AG T+S+V+ +VQRVTD+ Sbjct: 394 FAVVATEVRSLAQRSATAAKEIKTLIDNSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDV 453 Query: 451 MSEISAASNEQSAGIDQVSRAVTQMDEATQQNAALVEQASAAAKSLEQQAQALMQEVAIF 510 MSEISAAS EQ+ GI+QV++A+TQMDE TQQNAALVE+A++A++SL QAQ L + V +F Sbjct: 454 MSEISAASGEQTQGIEQVNQAITQMDEVTQQNAALVEEAASASQSLSHQAQRLSELVGVF 513 Query: 511 RVGQGDVVSLRPQVNAQQPAPKAAATPAKPVAATKPAVPKAVPALKRPALPAAAS-AKPA 569 R+ P AA VA A P P +RPA+ A S A PA Sbjct: 514 RL------------------PGAARQQVPEVAVVATAAPAYTP--RRPAVAGATSTATPA 553 Query: 570 SRLPAGDDGDWETF 583 + G D WETF Sbjct: 554 LAVAQGPDEQWETF 567 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 361 bits (927), Expect = e-101, Method: Compositional matrix adjust. Identities = 249/572 (43%), Positives = 358/572 (62%), Gaps = 41/572 (7%) Query: 1 MSIKNLSIKAQLAIAVLVLSLLL---LALGLSGLLGMSAAVS--INRQLSEERIPKTVAA 55 M NLSI +LAIA +L L++ +ALGL+ L ++ A+ +N + + I T++ Sbjct: 1 MRFNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60 Query: 56 --DNTLIWIGRQRTSLDQAAMSLDAAWTERMFVMEANARKEALQWWAKYSALPQTDEGKV 113 D+ I + Q D A ++ + E + E + + + + L E K Sbjct: 61 KVDDVAISLRNQLLMTDPAQIAAEQKTIESL-------SAENTKLYDELTRLVANPEAKA 113 Query: 114 MLKKVSE---GLAATQVELDKFIAAIKSGDRQA----IADQARKVGSVYTAMQLDGQALN 166 L KV+E AA + ++DK + SGD+ A + + + +Y + QLD L+ Sbjct: 114 KLDKVTETRKSYAALRKQIDKLQS---SGDKDAAIKLMLSEMVPLQKIYFS-QLD--ELS 167 Query: 167 KYETEQAAESLAASNARYQASRMFSIAAVIGGLLLAFFSWWSLRRAIGEPMQRALRHFDA 226 + + +S+ + A Y+ +RM + A + A F W++ R+I P+ RA+ + Sbjct: 168 DTQQKLMDQSVDQAEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAET 227 Query: 227 IANGDLTQPVHVHSKNEMGQLLQGLSRMQESLSRTVRAVRGGSDAIATATREIASGNLDL 286 +A GDLT + HS +E G+LLQ L+ M + L V VR G+D++ TA+ +IA+GNLDL Sbjct: 228 VAAGDLTAVIAAHSNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDL 287 Query: 287 SARTEQQAASLEETASSMEELTGTVKHNADNARQATTLAVNASTIAADGNAVVGRVVQTM 346 S+RTE+QA++LEETASS+EELT +VK NAD+ R+++ LA NAS +A G V +VVQTM Sbjct: 288 SSRTEEQASALEETASSLEELTSSVKQNADHTRKSSELAANASQVANQGGLAVKQVVQTM 347 Query: 347 EEIRESSARITDIVSIIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRALAQRSS 406 I +SS +I DI+S+IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQRS+ Sbjct: 348 GAINDSSHKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSA 407 Query: 407 SAAKEIKELIMHSVERVQAGSELVGQAGDTMSDVIQAVQRVTDIMSEISAASNEQSAGID 466 +AAKEIKELI SV +V +G+ELV QAG TM V+ ++++V+ I+ EISAA+ EQS GI+ Sbjct: 408 TAAKEIKELINDSVNQVTSGTELVAQAGSTMDAVVNSIEQVSHIVGEISAATREQSDGIE 467 Query: 467 QVSRAVTQMDEATQQNAALVEQASAAAKSLEQQAQALMQEVAIFRVGQGDVVSLRPQVNA 526 QV++A+ QMD TQQNAALVE+A+AAA++L+ QAQ L+ V +FR+ +V Sbjct: 468 QVNQAIMQMDNTTQQNAALVEEAAAAAQALQDQAQRLLDLVGVFRL---------DEVGG 518 Query: 527 QQPAPKAAATPAKP----VAATKPAVPKAVPA 554 PAP A A P P V+A P K++PA Sbjct: 519 SGPAPSAVA-PVAPVLRKVSAAAPRATKSLPA 549 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.124 0.329 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,243,863 Number of extensions: 43291 Number of successful extensions: 647 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 321 Number of HSP's successfully gapped: 71 Length of query: 583 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 493 Effective length of database: 1,193,720 Effective search space: 588503960 Effective search space used: 588503960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)