BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0071.p (275 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310590|ref|YP_003774682.1| phosphate ABC transporter ATPas... 562 e-162 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 147 1e-36 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 141 5e-35 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 136 2e-33 gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transpo... 135 2e-33 >gi|300310590|ref|YP_003774682.1| phosphate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 272 Score = 562 bits (1449), Expect = e-162, Method: Compositional matrix adjust. Identities = 269/272 (98%), Positives = 269/272 (98%) Query: 4 MTTAHQMASHASTAPLNAAAAQKTTLEVSQLNFYYGGFQGLKNINLNIYEGKVTAFIGPS 63 MTTAHQMASHASTAP NAAA QK TLEVSQLNFYYGGFQGLKNINLNIYEGKVTAFIGPS Sbjct: 1 MTTAHQMASHASTAPANAAAPQKATLEVSQLNFYYGGFQGLKNINLNIYEGKVTAFIGPS 60 Query: 64 GCGKSTLLRTFNRMYDLYPGQRAEGKIIYAGNNILEPGQDLNMLRAKVGMVFQKPTPFPM 123 GCGKSTLLRTFNRMYDLYPGQRAEGKIIYAGNNILEPGQDLNMLRAKVGMVFQKPTPFPM Sbjct: 61 GCGKSTLLRTFNRMYDLYPGQRAEGKIIYAGNNILEPGQDLNMLRAKVGMVFQKPTPFPM 120 Query: 124 SVYDNIAFGIRLYENLPKGEMDERVEWALNKAALWGEVKDKLHKSGLSLSGGQQQRLCIA 183 SVYDNIAFGIRLYENLPKGEMDERVEWALNKAALWGEVKDKLHKSGLSLSGGQQQRLCIA Sbjct: 121 SVYDNIAFGIRLYENLPKGEMDERVEWALNKAALWGEVKDKLHKSGLSLSGGQQQRLCIA 180 Query: 184 RGVAVKPEVLLLDEPTSALDPISTAKVEELIGELKNDYTIAIVTHNMQQAARCSDYTAYM 243 RGVAVKPEVLLLDEPTSALDPISTAKVEELIGELKNDYTIAIVTHNMQQAARCSDYTAYM Sbjct: 181 RGVAVKPEVLLLDEPTSALDPISTAKVEELIGELKNDYTIAIVTHNMQQAARCSDYTAYM 240 Query: 244 YLGELVEFGETDQIFMNPVRKETQDYITGRFG 275 YLGELVEFGETDQIFMNPVRKETQDYITGRFG Sbjct: 241 YLGELVEFGETDQIFMNPVRKETQDYITGRFG 272 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 147 bits (370), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 85/244 (34%), Positives = 131/244 (53%), Gaps = 11/244 (4%) Query: 29 LEVSQLNFYYGGFQGLKNINLNIYEGKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRAEG 88 +EV +++ +G + LK+++L++ +G+V IGPSG GKST+LR N + G Sbjct: 2 IEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESY-----ERG 56 Query: 89 KIIYAGNNILEPGQDLNMLRAKVGMVFQKPTPFP-MSVYDNIAFGIRLYENLPKGEMDER 147 I+ G + G D++ LR +VGMVFQ+ FP +V +N+ G L + + Sbjct: 57 DILIDGQRVDRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQARSE 116 Query: 148 VEWALNKAALWGEVKDKLHKSGLSLSGGQQQRLCIARGVAVKPEVLLLDEPTSALDPIST 207 L+K L + LSGGQQQR+ IAR +A++PE +L DEPTSALDP Sbjct: 117 AMSLLDKVGLAA----RCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELV 172 Query: 208 AKVEELIGELKND-YTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMNPVRKET 266 +V ++ L D T+ +VTH M A +D +++ G +VE G Q+ P T Sbjct: 173 GEVLAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHART 232 Query: 267 QDYI 270 QD++ Sbjct: 233 QDFL 236 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 141 bits (356), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 135/244 (55%), Gaps = 11/244 (4%) Query: 29 LEVSQLNFYYGGFQGLKNINLNIYEGKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRAEG 88 ++V+QL +G L+ I+ I +V IGPSG GKST LR N + ++ ++G Sbjct: 2 IKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEV-----SDG 56 Query: 89 KIIYAGNNILEPGQDLNMLRAKVGMVFQKPTPFP-MSVYDNIAFGIRLYENLPKGEMDER 147 I G + +P +LN LRA++GMVFQ+ FP M+V +N+ + L + E Sbjct: 57 DIFIEGVKLNDPKVNLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKLSRREAVLV 116 Query: 148 VEWALNKAALWGEVKDKLHKSGLSLSGGQQQRLCIARGVAVKPEVLLLDEPTSALDPIST 207 E L K L DK+ LSGGQQQR+ IAR +A++P+V+L DEPTSALDP Sbjct: 117 AEKLLQKVGLL----DKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELV 172 Query: 208 AKVEELIGELKND-YTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMNPVRKET 266 +V ++ +L + T+ +VTH M A SD ++ G ++E G Q+ +P + T Sbjct: 173 GEVLTVMKQLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGDPHHERT 232 Query: 267 QDYI 270 +D++ Sbjct: 233 RDFL 236 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 136 bits (343), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 133/244 (54%), Gaps = 11/244 (4%) Query: 29 LEVSQLNFYYGGFQGLKNINLNIYEGKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRAEG 88 +E++ + +G Q L I+L++ G+V A IG SG GKST+LR N + + G Sbjct: 4 VEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETI-----DGG 58 Query: 89 KIIYAGNNILEPGQDLNMLRAKVGMVFQKPTPFP-MSVYDNIAFGIRLYENLPKGEMDER 147 I AG+ + + L LR VGMVFQ FP ++V +NI R+ + E Sbjct: 59 SITVAGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARET 118 Query: 148 VEWALNKAALWGEVKDKLHKSGLSLSGGQQQRLCIARGVAVKPEVLLLDEPTSALDPIST 207 L + L K LSGGQQQR+ IAR +A++P+V+L DE TSALDP T Sbjct: 119 AIKVLKQVGL----DHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELT 174 Query: 208 AKVEELIGEL-KNDYTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMNPVRKET 266 A+V +++ EL + T+ +VTH M+ A R +D T +M+ G++ E +++ F +P E Sbjct: 175 AEVLKVMEELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEA 234 Query: 267 QDYI 270 + +I Sbjct: 235 RQFI 238 >gi|300313148|ref|YP_003777240.1| glutamate/aspartate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 135 bits (341), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 136/244 (55%), Gaps = 11/244 (4%) Query: 29 LEVSQLNFYYGGFQGLKNINLNIYEGKVTAFIGPSGCGKSTLLRTFNRMYDLYPGQRAEG 88 +E++ ++ +YG FQ L + + ++ +G V GPSG GKSTL++T N L P Q+ G Sbjct: 2 IELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVN---GLEPFQK--G 56 Query: 89 KIIYAGNNILEPGQDLNMLRAKVGMVFQKPTPFP-MSVYDNIAFGIRLYENLPKGEMDER 147 I G ++ +P +L+ LRA++GMVFQ FP +S+ +N+ G K E E+ Sbjct: 57 TITVDGVSVGDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEK 116 Query: 148 VEWALNKAALWGEVKDKLHKSGLSLSGGQQQRLCIARGVAVKPEVLLLDEPTSALDPIST 207 L++ L KDK LSGGQQQR+ IAR +++ P +L DEPTSALDP Sbjct: 117 GLKYLDRVGLLAH-KDKFPGQ---LSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMI 172 Query: 208 AKV-EELIGELKNDYTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETDQIFMNPVRKET 266 +V + ++G + T+ +VTH M A + ++ +M G +VE D+ F P + Sbjct: 173 NEVLDVMVGLAQEGMTMMVVTHEMGFARKVANRVVFMDKGVVVEDCAKDEFFAQPRSERA 232 Query: 267 QDYI 270 +D++ Sbjct: 233 RDFL 236 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 851,462 Number of extensions: 35043 Number of successful extensions: 467 Number of sequences better than 1.0e-08: 125 Number of HSP's gapped: 281 Number of HSP's successfully gapped: 130 Length of query: 275 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 191 Effective length of database: 1,222,130 Effective search space: 233426830 Effective search space used: 233426830 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)