BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0068.p (424 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310593|ref|YP_003774685.1| phosphate regulon two-component... 827 0.0 gi|300313895|ref|YP_003777987.1| two-component system sensor his... 116 3e-27 gi|300309362|ref|YP_003773454.1| transmembrane sensory transduct... 113 3e-26 gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine ... 110 2e-25 gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra... 107 2e-24 >gi|300310593|ref|YP_003774685.1| phosphate regulon two-component sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 436 Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/421 (95%), Positives = 411/421 (97%) Query: 1 LRLVLCLAGAGVVGFFFGPIIGLVTAVLGVGAMMIAHLHYLLRLSTWLDDSGQSRLPDGW 60 LRLVLCLAGAGVVGFFFGPI GLVTAVLGVGAMMI HLHYLLRLSTWLDDSGQSRLPDGW Sbjct: 13 LRLVLCLAGAGVVGFFFGPIAGLVTAVLGVGAMMITHLHYLLRLSTWLDDSGQSRLPDGW 72 Query: 61 GAWTDVYARLYRMRRDDERNQAELAEWLARFRQAMSLLPDGVVIMDDVLFLEWCNPAAQS 120 GAWTDVYARLYRMRRDDE+NQAELAEWLARFRQAMSLLPDGVVIMDDVLFLEWCNPAAQ Sbjct: 73 GAWTDVYARLYRMRRDDEKNQAELAEWLARFRQAMSLLPDGVVIMDDVLFLEWCNPAAQQ 132 Query: 121 HLGLKLDRDKGMRVTNLIRNPAFIDYIILGRYEQPLTLALHERKLIIQIIPFENRRQILV 180 HLGLKLDRDKGMRVTNLIRNPAFIDYIILGRYEQPLT+ LHERKLIIQIIPFENRRQILV Sbjct: 133 HLGLKLDRDKGMRVTNLIRNPAFIDYIILGRYEQPLTMTLHERKLIIQIIPFENRRQILV 192 Query: 181 THDVTESQRIDMMRRDFVANASHELRTPLTVINGFLEIALAQPNLEESTRMAHLKLMTEQ 240 THDVTES+RIDMMRRDFVANASHELRTPLTVINGFLEIALAQPNLEE TRMAHLKLMTEQ Sbjct: 193 THDVTESERIDMMRRDFVANASHELRTPLTVINGFLEIALAQPNLEEGTRMAHLKLMTEQ 252 Query: 241 GQRMQNLIDDMLTLTRLESIDYPLRSEVLRVQPLLERIAEEGLALSAGKHDIRLIVDGPD 300 GQRMQNLIDDMLTLTRLESIDYPLR+EVLRV+PLLERIAEEG ALSAGKH+I L +DGPD Sbjct: 253 GQRMQNLIDDMLTLTRLESIDYPLRTEVLRVRPLLERIAEEGRALSAGKHEIVLTIDGPD 312 Query: 301 LKGNAEELRSAFTNLVTNAVRYTPEGGTITLRWQSDEQGAHFAVQDTGIGISPEHISRLT 360 LKGNAEELRSAFTNLVTNAVRYTPEGG I+LRWQSDEQGAHFAVQDTGIGISPEHISRLT Sbjct: 313 LKGNAEELRSAFTNLVTNAVRYTPEGGRISLRWQSDEQGAHFAVQDTGIGISPEHISRLT 372 Query: 361 ERFYRVDKSRSRETQGTGLGLAIVRHVLLRHHATLEIASVPDHGSTFTVHFPATQTIADY 420 ERFYRVDKSRSRETQGTGLGLAIVRHVLLRHHATLEIASVPDHGSTFTVHFP+TQTI DY Sbjct: 373 ERFYRVDKSRSRETQGTGLGLAIVRHVLLRHHATLEIASVPDHGSTFTVHFPSTQTIQDY 432 Query: 421 A 421 A Sbjct: 433 A 433 >gi|300313895|ref|YP_003777987.1| two-component system sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 124/237 (52%), Gaps = 23/237 (9%) Query: 188 QRIDMMRRDFVANASHELRTPLTVINGFLEI---ALAQPNLEESTRMAHLKLMTEQGQRM 244 +R + +RR+F+A+ SHELRTPL ++NG LE + QP+ + L+ + + + + Sbjct: 242 ERNEKLRREFMADVSHELRTPLAILNGQLEALEDGVLQPDAQT------LRSLKSEVEHL 295 Query: 245 QNLIDDMLTLTRLESIDYPLRSEVLRVQPLL--------ERIAEEGLALSAGKHDIRLIV 296 L+ D+ L+ ++ R + + PLL +R ++ G+ LS L Sbjct: 296 NKLVGDLYDLSLADAGALTYRRADIDLAPLLRDSAALYSDRFSQRGMRLSC-----ELPA 350 Query: 297 DGPDLKGNAEELRSAFTNLVTNAVRYTPEGGTITLRWQSDEQGAHFAVQDTGIGISPEHI 356 P + G+A L+ +NL N++RYT GG + + +Q H D+ G+ PE + Sbjct: 351 SMP-VHGDAARLQQLLSNLFENSLRYTDAGGRLQVHAHLQQQHWHLVFDDSEPGVPPEVM 409 Query: 357 SRLTERFYRVDKSRSRETQGTGLGLAIVRHVLLRHHATLEIASVPDHGSTFTVHFPA 413 +RL ERF+RV+ SR+R + G GLGLAI R ++ H T+ ++ P G V PA Sbjct: 410 ARLFERFFRVEASRNRASGGAGLGLAICRRIVDAHQGTIGASASPLGGLRVVVVLPA 466 >gi|300309362|ref|YP_003773454.1| transmembrane sensory transduction histidine kinase for cobalt/zinc/ cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 467 Score = 113 bits (283), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 87/248 (35%), Positives = 133/248 (53%), Gaps = 17/248 (6%) Query: 182 HDVTES--QRIDMMRRDF------VANASHELRTPLTVINGFLEIALAQP-NLEESTRMA 232 H++ ES + +D + R F A+ +H++RTPL + ++AL +P ++E A Sbjct: 225 HEIVESFNEMLDRLHRSFQQLSQFSADLAHDVRTPLNNLMVQTQVALGKPRGIDEY--QA 282 Query: 233 HLKLMTEQGQRMQNLIDDMLTLTRLESIDYPLRSEVLRVQPLLERIAE--EGLALSAGKH 290 L E+ +R+ +++ ML L R E+ L+ + L V L RIA+ EG+A A Sbjct: 283 LLSSNIEEYERLSRMMESMLFLARAENAHVVLQWQELDVAQELTRIADYFEGIADEA--- 339 Query: 291 DIRLIVDGPD-LKGNAEELRSAFTNLVTNAVRYTPEGGTITLRWQSDEQGAHFAVQDTGI 349 +RL+V G L+ +A LR A NLV NA+RYTP G I L+ + G +V + G Sbjct: 340 QVRLVVQGAGRLQADATLLRRAVGNLVANAIRYTPADGVIRLQVDAAGDGMEISVSNPGA 399 Query: 350 GISPEHISRLTERFYRVDKSRSRETQGTGLGLAIVRHVLLRHHATLEIASVPDHGSTFTV 409 GI E + RL +RFYR D SRS +GLGLAIVR +++ H + S P + F++ Sbjct: 400 GIPAEQLERLFDRFYRADPSRSSAGGSSGLGLAIVRSIMMLHGGQASVTSSPGQLTVFSL 459 Query: 410 HFPATQTI 417 FP + Sbjct: 460 RFPGRSAV 467 >gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 444 Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/232 (37%), Positives = 119/232 (51%), Gaps = 20/232 (8%) Query: 194 RRDFVANASHELRTPLTVINGFLEIALAQPNLEESTRMAHLKLMTEQGQRMQNLIDDMLT 253 +R FVA+A+HELRTPLT + L+ LA+ ++E R A + +R +L+ +LT Sbjct: 216 QRAFVADAAHELRTPLTALR--LQTQLAERAVDEEERRAAFADLKNGLERTTHLVHQLLT 273 Query: 254 LTRLES-----IDYPLRSEVLRVQPLLERIAEEG---LALSAGKHDIRLIVDGPDLKGNA 305 L R E LR+ + V L +AE G L LS D R + + GNA Sbjct: 274 LARQEPDAMSFTQVDLRALLGSVVGDLSSVAEHGGIDLGLSDQGDDGRPL----RVTGNA 329 Query: 306 EELRSAFTNLVTNAVRYTPEGGTITLRWQSDEQG-AHFAVQDTGIGISPEHISRLTERFY 364 + LR F NLV NA+RYTP GG + + G VQD+G GI+ + R+ +RFY Sbjct: 330 DALRILFNNLVDNALRYTPAGGVVDVGVDLSTAGYCTVVVQDSGPGIAESELPRVFDRFY 389 Query: 365 RVDKSR----SRETQGTGLGLAIVRHVLLRHHATLEIASVPDHGSTFTVHFP 412 R S+ SR G+GLGLAIVR + H +E+ + HG V FP Sbjct: 390 RAQHSQEGSGSRAAFGSGLGLAIVRQIADLHRVPVELRNT-GHGLQARVVFP 440 >gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 127/234 (54%), Gaps = 20/234 (8%) Query: 193 MRRDFVANASHELRTPLTVINGFLEIALAQPNLEESTRMAHLKLMTEQGQR-MQNLIDDM 251 +++ FVA+A+H+LRTPL VI+ ++ A L++ R+A + ++G R M +L + + Sbjct: 236 VQKRFVADAAHQLRTPLAVIDSQIQFAR---QLDDPARVAQVLASLQEGSRSMTDLTNKL 292 Query: 252 LTLTRLESID---YPLRSEV--LRVQPL-LERIAEEGLALSAG-KHDIRLIVDGPDLKGN 304 L L++ E+ D +P R+ V L V + LE ++ GLAL G + ++ + GN Sbjct: 293 LLLSQAEASDSSAFP-RAPVDLLAVSAMVLEELS--GLALKKGIDLGLETTLESAMVNGN 349 Query: 305 AEELRSAFTNLVTNAVRYTPEGGTITLRWQSDEQGAHFAVQDTGIGISPEHISRLTERFY 364 +L NL+ NA+RYTPEGG +T+ + V D G GI E R+ ERFY Sbjct: 350 EAQLMGMLMNLIDNALRYTPEGGKVTVGLEKKRSQMIITVSDNGPGIPAEVRERVFERFY 409 Query: 365 RVDKSRSRETQGTGLGLAIVRHVLLRHHATLEIASVPDHGSTF--TVHFPATQT 416 R + + + G+GLGLAIVR ++ ++ + P GS TV PA Q+ Sbjct: 410 R---NAAPDQPGSGLGLAIVREIVQASQGSIRL-DAPAQGSGLVATVSLPALQS 459 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.138 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,328,071 Number of extensions: 57254 Number of successful extensions: 323 Number of sequences better than 1.0e-08: 41 Number of HSP's gapped: 261 Number of HSP's successfully gapped: 41 Length of query: 424 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 336 Effective length of database: 1,203,190 Effective search space: 404271840 Effective search space used: 404271840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)