BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0066.p (424 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 493 e-140 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 307 1e-84 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 237 1e-63 gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra... 234 1e-62 gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 175 7e-45 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 493 bits (1268), Expect = e-140, Method: Compositional matrix adjust. Identities = 291/408 (71%), Positives = 320/408 (78%), Gaps = 10/408 (2%) Query: 1 MSYFANMKIGRRLGLGFAVILAAASVVVALSIWRLQGIAAATDEMMSEPLTKERLVSDWY 60 M YFANMKIGRRL LGFAVILAAASVVVALSIWRLQGIAAATDEMM EPLTKERLVSDWY Sbjct: 1 MRYFANMKIGRRLALGFAVILAAASVVVALSIWRLQGIAAATDEMMHEPLTKERLVSDWY 60 Query: 61 RTIHTSVRRTTAIAKSADPSLASFFAADAAEASRMSTEQQKAIEALIESPEEKAVFAKLG 120 RTIHTSVRRTTAIAKS+DPSLA+FFA DAA ASRMSTEQQKAIEALIES +EKAVF KLG Sbjct: 61 RTIHTSVRRTTAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAVFTKLG 120 Query: 121 EVRKDYIKHRDAISKAKADGNAEEAAKILAGPFDAAAKGYLENLQQLLNLQRANIDQVAK 180 EVRKDYIK+RDAISKAKA+G EEAA+ILAGPFD A KGYL+ LQQLL LQRANIDQVA Sbjct: 121 EVRKDYIKYRDAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQRANIDQVAA 180 Query: 181 DIQQVYHESRNLMIGLAILQVVLGWLFARSLALGITRPLEKAVNVAEAVAAGDLTTRVDD 240 IQ VY ESRNLM+ LA LQVVLGWLFAR+LALGITRPLE+AV VAEAVAAGDLT R+D+ Sbjct: 181 HIQTVYRESRNLMLALAFLQVVLGWLFARTLALGITRPLEQAVEVAEAVAAGDLTHRIDE 240 Query: 241 ELVTRKDETGKLMHALHAMTGNLARIVGQVRSGTDAIGTASREIATGNLDLSARTERQAG 300 L R DETGKLMHALHAMTGNLARIVGQVR GTDAI TAS+EIATGNLDLSARTERQAG Sbjct: 241 RLAARGDETGKLMHALHAMTGNLARIVGQVRGGTDAIATASKEIATGNLDLSARTERQAG 300 Query: 301 ALEETASAMEXQVERAGTTMD------EVVASVRQVA----DIVSEITAASSEQSDGISQ 350 ALEETASAME D ++ AS VA ++VS++ + ++ + Sbjct: 301 ALEETASAMEELTSTVSQNADNARQANQLAASASSVAQQGGEVVSQVISTMGSINESSRK 360 Query: 351 VNLAITDMDQTTQQNAALVEEAAAAAEAMQEQAARLSEVVSQFKVLAQ 398 + I+ +D Q L AA A EQ + V S+ + LAQ Sbjct: 361 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQ 408 Score = 145 bits (366), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 96/112 (85%), Positives = 100/112 (89%), Gaps = 5/112 (4%) Query: 313 VERAGTTMDEVVASVRQVADIVSEITAASSEQSDGISQVNLAITDMDQTTQQNAALVEEA 372 V RAG+TMDEVVASVRQVADIVSEI+AASSEQSDGISQVNLAITDMDQTTQQNAALVEEA Sbjct: 435 VTRAGSTMDEVVASVRQVADIVSEISAASSEQSDGISQVNLAITDMDQTTQQNAALVEEA 494 Query: 373 AAAAEAMQEQAARLSEVVSQFKVLAQDQVGYGSEEVASRPPVDITPPRPALR 424 AAAAEAMQEQAARLSEVVSQFK+L QDQ+ Y A R VDITPP PALR Sbjct: 495 AAAAEAMQEQAARLSEVVSQFKLLGQDQIAY-----APRSAVDITPPLPALR 541 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 307 bits (787), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 165/332 (49%), Positives = 228/332 (68%), Gaps = 14/332 (4%) Query: 1 MSYFANMKIGRRLGLGFAVILAAASVVVALSIWRLQGIAAATDEMMSEPLTKERLVSDWY 60 M+ NM IGRRL LGFA+IL + ++ + +WRL +A AT EMM+EPL ERL++DWY Sbjct: 1 MNIIGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWY 60 Query: 61 RTIHTSVRRTTAIAKSADPSLASFFAADAAEASRMSTEQQKAIEALIESPEEKAVFAKLG 120 + +RRT AIAKS+DP+L +FAA+ A +S+ S E QK +EAL+ +PEEKA+F K+G Sbjct: 61 TNLVAGIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIG 120 Query: 121 EVRKDYIKHRDAISKAKADGNAEEAAKILAGPFDAAAKGYLENLQQLLNLQRANIDQVAK 180 E+RK Y+ RD I+KAKA GN EEA +IL F A Y + +++L++ QR +D A+ Sbjct: 121 ELRKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAR 180 Query: 181 DIQQVYHESRNLMIGLAILQVVLGWLFARSLALGITRPLEKAVNVAEAVAAGDLTTRVDD 240 +I + +SR L++ L L ++LG +FAR L LGIT+PL +AV+V+ VA GDL++ + Sbjct: 181 EIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEI-- 238 Query: 241 ELVTRKDETGKLMHALHAMTGNLARIVGQVRSGTDAIGTASREIATGNLDLSARTERQAG 300 VT +DETG+L+ +L M +L IV VRSGTD I TAS EIA GNLDLS+RTE+QA Sbjct: 239 -AVTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQAS 297 Query: 301 ALEETASAMEXQVERAGTTMDEVVASVRQVAD 332 +L ETASAME E++++VRQ AD Sbjct: 298 SLAETASAME-----------ELISTVRQNAD 318 Score = 99.4 bits (246), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 65/111 (58%), Positives = 80/111 (72%), Gaps = 8/111 (7%) Query: 313 VERAGTTMDEVVASVRQVADIVSEITAASSEQSDGISQVNLAITDMDQTTQQNAALVEEA 372 VE+AG TM EVV+SVR+V DIV+EI+AAS+EQ+ GI Q+NLAIT MDQ TQQNAALVEEA Sbjct: 432 VEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQVTQQNAALVEEA 491 Query: 373 AAAAEAMQEQAARLSEVVSQFKVLAQDQVGYGSEEVASRPPVDITPPRPAL 423 AAAA +MQ QA RL ++VS F++ E R +D+TP P L Sbjct: 492 AAAAASMQTQAGRLMQMVSVFRL--------SEREPLVRREIDVTPSSPVL 534 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 237 bits (605), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 149/390 (38%), Positives = 216/390 (55%), Gaps = 38/390 (9%) Query: 6 NMKIGRRLGLGFAVILAAASVVVALSIWRLQGIAAATDEMMSEPLTKERLVSDWYRTIHT 65 N+KIG RL +GF +L +V+VAL +WRL I ATD+M L KER W+ I Sbjct: 3 NLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAIKE 62 Query: 66 SVRRTTAIAKSADPSLASFFAADA-AEASRMSTEQQKAIEALIESPEEKAVFAKLGEVRK 124 + RT A+ KS D + ++F A+++R+S + QK +EA I EEK +F ++G++R Sbjct: 63 NGVRTFAVMKSDDDAFQAYFQKQIDAQSARIS-QLQKEVEAAITDAEEKRLFDEVGKLRA 121 Query: 125 DYIKHRDAISKAKADGNAEEAAKILAGPFDAAAKGYLENLQQLLNLQRANIDQVAKDIQQ 184 Y R +I K G+ A ++ Y + + + + Q+ IDQ A I + Sbjct: 122 AYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAINR 181 Query: 185 VYHESRNLMIGLAILQVVLG----WLFARSLALGITRPLEKAVNVAEAVAAGDLTTRVDD 240 Y R++++ L +++VLG WL RS ITRPL +AV +AE VAAGDLT+R+D Sbjct: 182 DYRSGRSMLLALGAIEIVLGAALAWLLTRS----ITRPLNQAVTIAETVAAGDLTSRIDS 237 Query: 241 ELVTRKDETGKLMHALHAMTGNLARIVGQVRSGTDAIGTASREIATGNLDLSARTERQAG 300 + +DETGKL+ AL M GNL IVG+VR GT+ I TASREIATGNLDLSARTE QAG Sbjct: 238 ---SSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAG 294 Query: 301 ALEETASAMEXQVERAGTTMDEVVASVRQVADIVSEITAASSEQSDGISQVNLAITDMDQ 360 +LEETASAME ++T+ + +D Q N Q Sbjct: 295 SLEETASAME-------------------------QLTSTVKQNADNARQANELAASASQ 329 Query: 361 TTQQNAALVEEAAAAAEAMQEQAARLSEVV 390 Q A+V++ A A+ + ++++++ Sbjct: 330 VATQGGAVVDQVVATMGAIHASSQKIADII 359 Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 74/177 (41%), Positives = 98/177 (55%), Gaps = 32/177 (18%) Query: 247 DETGKLMHALHAMTGNLARIVGQVRSGTDAI------------------GTASREIATGN 288 D+ M A+HA + +A I+G + D I G R A Sbjct: 339 DQVVATMGAIHASSQKIADIIGVI----DGIAFQTNILALNAAVEAARAGEQGRGFAVVA 394 Query: 289 LDLSARTERQAGALEETASAMEXQVE----------RAGTTMDEVVASVRQVADIVSEIT 338 ++ + +R A A +E ++ VE RAG TM EVV SV +V +V EIT Sbjct: 395 SEVRSLAQRSASAAKEIKQLIDDSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREIT 454 Query: 339 AASSEQSDGISQVNLAITDMDQTTQQNAALVEEAAAAAEAMQEQAARLSEVVSQFKV 395 AS EQSDGI QVNLAIT +D+TTQQNAALVE+AAAAA +MQ+QAA L++ VS F++ Sbjct: 455 LASQEQSDGIEQVNLAITHIDETTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRL 511 >gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 234 bits (596), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 134/327 (40%), Positives = 199/327 (60%), Gaps = 14/327 (4%) Query: 6 NMKIGRRLGLGFAVILAAASVVVALSIWRLQGIAAATDEMMSEPLTKERLVSDWYRTIHT 65 +++IG RLG GFAV+L + VV A+ IWRL+ +A T +MM PL ERLVS W + Sbjct: 4 DIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAVQTQQMMDVPLKTERLVSQWNTLLLI 63 Query: 66 SVRRTTAIAKSADPSLASFFAADAAEASRMSTEQQKAIEALIESPEEKAVFAKLGEVRKD 125 +++RTT + KS DP L +F A +AA +S+ S + K +E L+ S EEK +FA + RK Sbjct: 64 AIQRTTTVVKSHDPELEAFLAKEAAASSKESAQTLKDVEQLLASEEEKKMFAAINVARKQ 123 Query: 126 YIKHRDAISKAKADGNAEEAAKILAGPFDAAAKGYLENLQQLLNLQRANIDQVAKDIQQV 185 ++ RD I AK G+A + ++ + AK + ++ LL+ +RA IDQ++ IQQ Sbjct: 124 FLTIRDQIYAAKKQGDAAQVEELYQKQYVGIAKSTQDAMRALLDFERARIDQISAQIQQD 183 Query: 186 YHESRNLMIGLAILQVVLGWLFARSLALGITRPLEKAVNVAEAVAAGDLTTRVDDELVTR 245 S++ ++ L ++ ++ G FA L ITRP+ A+ +++ VAAGDLT+R Sbjct: 184 ASSSQHQIMLLEVVILLCGIAFAVLLTRSITRPVHVALAISQRVAAGDLTSRAQ---AMG 240 Query: 246 KDETGKLMHALHAMTGNLARIVGQVRSGTDAIGTASREIATGNLDLSARTERQAGALEET 305 +DE G+L+ +L M+ L +V VR G D+I AS EIA GNLDLSARTE QAGALE+T Sbjct: 241 RDELGQLVASLQGMSERLHGVVSTVRHGADSIAMASGEIANGNLDLSARTEEQAGALEQT 300 Query: 306 ASAMEXQVERAGTTMDEVVASVRQVAD 332 A+++E E+ +SVR +D Sbjct: 301 AASIE-----------ELTSSVRTNSD 316 Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/85 (54%), Positives = 63/85 (74%) Query: 313 VERAGTTMDEVVASVRQVADIVSEITAASSEQSDGISQVNLAITDMDQTTQQNAALVEEA 372 VE+AG TM EVV SV+ +V EI+ AS +Q++GI QVN A+ MD TQQNAALVE+A Sbjct: 430 VEQAGKTMQEVVGSVQGAHTLVGEISTASRQQAEGIHQVNQAVGQMDGVTQQNAALVEQA 489 Query: 373 AAAAEAMQEQAARLSEVVSQFKVLA 397 AAAA+++++QAA+L V+ F + A Sbjct: 490 AAAAKSLEDQAAQLKRAVAFFSLQA 514 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 175 bits (443), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 132/402 (32%), Positives = 204/402 (50%), Gaps = 50/402 (12%) Query: 1 MSYFANMKIGRRLGLGFAVILAAASVVVALSIWRLQGIAAATDEMMSEPLTKERLVSDWY 60 M++F N+KI ++L + FA ++ ++ +I L+ + A+ +M ++W Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDM----------ATNWL 50 Query: 61 RTIHTSVRRTTAIAKSADPSLASFFAADAAE--------ASRMST--EQQKAIEALIESP 110 TI + ++ + L AA AE SR+ +Q+ A EA I Sbjct: 51 PTIKAAQSIQASLPRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEA 110 Query: 111 EEKAVFAKLGEVRKDYIKHRDAISKAKADGNAEEAAKILAGPFDAAAKGYLENLQQLLNL 170 EEK ++ K + Y++ +++ A+G EEA + G + + +EN+ +++ + Sbjct: 111 EEKVLYEKFSKSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKV 170 Query: 171 QRANIDQVAKDIQQVYHESRNLMIGLAILQVVLGWLFARSLALGITRPLEKAVNVAEAVA 230 A + +QVY + +IGL VV+ A +A ++RPL +AV VAE VA Sbjct: 171 NDAGSKRSDDMAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVA 230 Query: 231 AGDLTTRVDDELVTRKDETGKLMHALHAMTGNLARIVGQVRSGTDAIGTASREIATGNLD 290 GDLT D T DETG LMH+L AM +L +IVG+VR+GTD I TAS+EIATGNLD Sbjct: 231 QGDLTM---DIRATSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLD 287 Query: 291 LSARTERQAGALEETASAMEXQVERAGTTMDEVVASVRQVADIVSEITAASSEQSDGISQ 350 LS+RTE QAG+LEETASAME E+TA + +D Q Sbjct: 288 LSSRTEEQAGSLEETASAME-------------------------ELTATVKQNADNARQ 322 Query: 351 VN-LAITDMDQTTQQNAALVEEAAAAAEAMQEQAARLSEVVS 391 N LA + D T Q A+V + E + E + R+++++S Sbjct: 323 ANQLAASASDIAT-QGGAVVGQVVQTMEGITESSNRIADIIS 363 Score = 84.7 bits (208), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/83 (72%), Positives = 74/83 (89%) Query: 313 VERAGTTMDEVVASVRQVADIVSEITAASSEQSDGISQVNLAITDMDQTTQQNAALVEEA 372 VERAG TM EVVASVR+V D+V+EI+AAS+EQS GI ++N AIT MD+ TQQNAALVEEA Sbjct: 432 VERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEVTQQNAALVEEA 491 Query: 373 AAAAEAMQEQAARLSEVVSQFKV 395 AAAA+++Q+QAARLS+VVS FK+ Sbjct: 492 AAAAQSLQDQAARLSQVVSVFKL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.126 0.332 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 939,593 Number of extensions: 29806 Number of successful extensions: 564 Number of sequences better than 1.0e-08: 65 Number of HSP's gapped: 362 Number of HSP's successfully gapped: 125 Length of query: 424 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 336 Effective length of database: 1,203,190 Effective search space: 404271840 Effective search space used: 404271840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 132 (55.5 bits)