BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0065.p (570 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310596|ref|YP_003774688.1| 2-keto-4-pentenoate hydratase/2... 560 e-160 gi|300310595|ref|YP_003774687.1| 3-oxoacyl-(acyl-carrier protein... 493 e-140 gi|300309919|ref|YP_003774011.1| 3-oxoacyl-(acyl-carrier protein... 199 7e-52 gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herb... 128 1e-30 gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein... 123 4e-29 >gi|300310596|ref|YP_003774688.1| 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase [Herbaspirillum seropedicae SmR1] Length = 281 Score = 560 bits (1442), Expect = e-160, Method: Compositional matrix adjust. Identities = 266/280 (95%), Positives = 277/280 (98%) Query: 1 MKLLRYGPVGQEKPGVLDQSGKIRDLSAYIKDVNGAVLDDASLDKIRKLDLESLPAVEGS 60 MKLLRYGPVGQEKPG+LDQ+GKIRDLSA+IKDVNGAVLDDASL+KIRKLDL +LP VEG+ Sbjct: 1 MKLLRYGPVGQEKPGILDQAGKIRDLSAHIKDVNGAVLDDASLEKIRKLDLNTLPVVEGN 60 Query: 61 PRIGACVGNIGKFICIGLNYADHAAESNLPIPAEPVVFNKWTSAVVGPNDDVKIPRGSKK 120 PRIGACVGNIGKFICIGLNYADHAAESNLPIPAEPVVFNKWTSAVVGPND+VKIPRGSKK Sbjct: 61 PRIGACVGNIGKFICIGLNYADHAAESNLPIPAEPVVFNKWTSAVVGPNDNVKIPRGSKK 120 Query: 121 TDWEVELGVVIGKGGSYIDEKDAMSHVAGYCVVNDVSEREYQIERGGTWDKGKGCDTFGP 180 TDWEVELGV+IGKGGSYIDEKDAMSHVAGYCVVNDVSEREYQIERGGTWDKGKGCDTFGP Sbjct: 121 TDWEVELGVIIGKGGSYIDEKDAMSHVAGYCVVNDVSEREYQIERGGTWDKGKGCDTFGP 180 Query: 181 IGPWLVTRDEVADPQKLGMWLEVDGKRYQNGNTSTMIFGVAHIVSYLSRFMSLQPGDVIS 240 IGPWLVTRDEVADPQKLGMWLEVDGKRYQNGNTSTMIF VAHIVSYLSRFMSLQPGDVIS Sbjct: 181 IGPWLVTRDEVADPQKLGMWLEVDGKRYQNGNTSTMIFNVAHIVSYLSRFMSLQPGDVIS 240 Query: 241 TGTPPGVGMGVKPEAVYLRAGQTMRLGIDGLGEQQQKTIE 280 TGTPPGVGMGVKPEAVYLRAGQT+RLGIDGLGEQ+QKTI+ Sbjct: 241 TGTPPGVGMGVKPEAVYLRAGQTIRLGIDGLGEQEQKTID 280 >gi|300310595|ref|YP_003774687.1| 3-oxoacyl-(acyl-carrier protein) reductase [Herbaspirillum seropedicae SmR1] Length = 250 Score = 493 bits (1270), Expect = e-140, Method: Compositional matrix adjust. Identities = 241/250 (96%), Positives = 247/250 (98%) Query: 321 MNHYDFQGRSAIITGGAQGFGYAVAERLLQGKAKVVLWDMDDKALAEARAKLEPLGNVET 380 MNHYDFQGRSAIITGGAQGFGYAVAERLLQGKAKVVLWDMD+KALAEAR KLE LGNVET Sbjct: 1 MNHYDFQGRSAIITGGAQGFGYAVAERLLQGKAKVVLWDMDEKALAEARRKLESLGNVET 60 Query: 381 VRVDISDQSDVQQAIEATEKLTQSIDILVHSAGIAGQNNPVADYSPEEWRRVIDIDLNGA 440 V+VDIS Q++VQQAIEATEKLTQSIDILVHSAGIAGQNNPVA+YSPEEWRRVIDIDLNGA Sbjct: 61 VKVDISSQAEVQQAIEATEKLTQSIDILVHSAGIAGQNNPVAEYSPEEWRRVIDIDLNGA 120 Query: 441 FYVNQVVVQRMIAQNYGRIVNIASIAGKEGNPTASAYSAAKAGMIALTKSLGKETATRNI 500 FYVNQVVVQRMIAQNYGRIVNIASIAGKEGNPTASAYSAAKAGMIALTKSLGKETAT+NI Sbjct: 121 FYVNQVVVQRMIAQNYGRIVNIASIAGKEGNPTASAYSAAKAGMIALTKSLGKETATKNI 180 Query: 501 AVNAITPAAAQTRILEQCTQAHIDYMLSKIPRARFVKVEELAAMVAWLVSEENSFTTASV 560 AVNAITPAAAQTRILEQCTQAHIDYMLSKIPRARFVKVEELAAMVAWLVSEENSFTTASV Sbjct: 181 AVNAITPAAAQTRILEQCTQAHIDYMLSKIPRARFVKVEELAAMVAWLVSEENSFTTASV 240 Query: 561 FDLSGGRATY 570 FDLSGGRATY Sbjct: 241 FDLSGGRATY 250 >gi|300309919|ref|YP_003774011.1| 3-oxoacyl-(acyl-carrier protein) reductase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 199 bits (505), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 117/247 (47%), Positives = 152/247 (61%), Gaps = 10/247 (4%) Query: 324 YDFQGRSAIITGGAQGFGYAVAERLLQGKAKVVLWDMDDKALAEARAKLEPLGNVETVRV 383 YDF A++TGG G G A++ RL G A+VV+WD A + R + + Sbjct: 8 YDFGDCVAVVTGGHGGIGAAISARLAAGGAQVVVWDQHHDAASPYRQQ----------SI 57 Query: 384 DISDQSDVQQAIEATEKLTQSIDILVHSAGIAGQNNPVADYSPEEWRRVIDIDLNGAFYV 443 DI+D V QA + T ID L+++AG AG P+ +Y EW R++ ++L G F+ Sbjct: 58 DITDAPAVMQAAQELLADTGRIDFLINNAGYAGPTVPLDEYDVGEWHRIVQVNLLGVFHA 117 Query: 444 NQVVVQRMIAQNYGRIVNIASIAGKEGNPTASAYSAAKAGMIALTKSLGKETATRNIAVN 503 + V M A GRIVNIAS+AGKEG P ASAYSAAKAG++ALTKSLGKE A + VN Sbjct: 118 CRSVTPAMRAARRGRIVNIASLAGKEGTPNASAYSAAKAGVLALTKSLGKELAESGVLVN 177 Query: 504 AITPAAAQTRILEQCTQAHIDYMLSKIPRARFVKVEELAAMVAWLVSEENSFTTASVFDL 563 AI PAA +T +L Q + AH+ M++K P R V+E+A M AWL S SF T +VFDL Sbjct: 178 AIAPAAVKTALLGQMSPAHVQTMIAKSPMHRLGSVDEVADMCAWLCSGSCSFNTGAVFDL 237 Query: 564 SGGRATY 570 SGGRATY Sbjct: 238 SGGRATY 244 >gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 246 Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 9/243 (3%) Query: 329 RSAIITGGAQGFGYAVAERLLQGKAKVVLW-----DMDDKALAEARAKLEPLGNVETVRV 383 R A +TGG G G A+ RL + VV DK LA R E ++ Sbjct: 4 RIAYVTGGMGGIGTAICTRLCKDGYTVVAGCGPNSTRKDKWLATMR---EQGFDIHASEG 60 Query: 384 DISDQSDVQQAIEATEKLTQSIDILVHSAGIAGQNNPVADYSPEEWRRVIDIDLNGAFYV 443 ++S+ + A E +D+LV++AGI ++ S ++W VID +LN F V Sbjct: 61 NVSNWESTKAAFEKVRAEIGEVDVLVNNAGIT-RDGQFRKMSKDDWDAVIDTNLNSLFNV 119 Query: 444 NQVVVQRMIAQNYGRIVNIASIAGKEGNPTASAYSAAKAGMIALTKSLGKETATRNIAVN 503 + V++ M + +GRI+NI+S+ G++G + YS AKAG+ T +L +E AT+ + VN Sbjct: 120 TKQVIEGMCERGFGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMALAQEVATKGVTVN 179 Query: 504 AITPAAAQTRILEQCTQAHIDYMLSKIPRARFVKVEELAAMVAWLVSEENSFTTASVFDL 563 ++P T ++ ++ ++S IP R + EE+A++VAW+ S E + T S F L Sbjct: 180 TVSPGYIGTDMVRAIRPEVLEKIVSGIPVKRLGEPEEIASIVAWIASSEGGYATGSDFSL 239 Query: 564 SGG 566 +GG Sbjct: 240 NGG 242 >gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein] reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 123 bits (309), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 133/249 (53%), Gaps = 5/249 (2%) Query: 321 MNHYDFQGRSAIITGGAQGFGYAVAERLLQGKAKVVLWDMDDKALAEARAKLEPLGNVET 380 M+ + QG+ A++TG ++G G A+A L + AKV+ + A L LG E Sbjct: 1 MSAQNLQGQVALVTGASRGIGRAIATELARQGAKVIGTATSESGAAAITEYLAALGP-EA 59 Query: 381 VRVDISDQSDVQQAIEATEKLTQ---SIDILVHSAGIAGQNNPVADYSPEEWRRVIDIDL 437 R + + +D + ++ E++ + S+ ILV++AGI Q+ EEW VI +L Sbjct: 60 GRGAVLNVNDAEASVALVEQVQKDFGSLSILVNNAGIT-QDQLAMRMKDEEWDSVIATNL 118 Query: 438 NGAFYVNQVVVQRMIAQNYGRIVNIASIAGKEGNPTASAYSAAKAGMIALTKSLGKETAT 497 +++ V++ M+ GRI+NI S+ G+ GNP Y+AAKAG+ ++++L +E + Sbjct: 119 TAVGRLSRAVLRGMMKARTGRIINITSVVGEAGNPGQMNYAAAKAGVAGMSRALAREIGS 178 Query: 498 RNIAVNAITPAAAQTRILEQCTQAHIDYMLSKIPRARFVKVEELAAMVAWLVSEENSFTT 557 RNI VN + P T + + +L +IP R EE+A VA+L S + ++ T Sbjct: 179 RNITVNCVAPGFIDTDMTRALNEQQSAAILQQIPLGRLGAAEEIAYAVAFLASPQAAYIT 238 Query: 558 ASVFDLSGG 566 + +++GG Sbjct: 239 GTTLNVNGG 247 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.134 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,912,286 Number of extensions: 85572 Number of successful extensions: 387 Number of sequences better than 1.0e-08: 48 Number of HSP's gapped: 305 Number of HSP's successfully gapped: 48 Length of query: 570 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 480 Effective length of database: 1,193,720 Effective search space: 572985600 Effective search space used: 572985600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)