BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0064.p (147 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310455|ref|YP_003774547.1| AsnC family transcription regul... 195 1e-51 gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory D... 105 1e-24 gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory p... 103 8e-24 gi|300312490|ref|YP_003776582.1| transcription regulator protein... 81 3e-17 gi|300313266|ref|YP_003777358.1| AsnC family transcription regul... 76 1e-15 >gi|300310455|ref|YP_003774547.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 164 Score = 195 bits (496), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 91/142 (64%), Positives = 113/142 (79%) Query: 1 LQRNGRMTNVDLSNEIGLSPSPCLHRVRRLEKAGYIAGYGAHIHLEKLGHVQFVFTQVTL 60 LQ+N R+TNV L++ +GLSPSPCL RV+RLEKAGYI+GYGA+I LEKL VQ VFT+VTL Sbjct: 20 LQQNSRITNVILADAVGLSPSPCLIRVKRLEKAGYISGYGAYIRLEKLADVQIVFTEVTL 79 Query: 61 SGHTRGDFEKFETLVRDVDEIVECHLISGAFTYLLKFVTRDLGHYQRVAEDVLREKGNVE 120 S H R DF KFE+ +R+VDEI+ECHL+SG + YLLKF+TR + HYQ V E +L + +E Sbjct: 80 SDHRREDFAKFESTIRNVDEIIECHLVSGGYDYLLKFMTRSVVHYQSVIESLLEQNLRIE 139 Query: 121 KYFSYIVIASPSLKGQYPLDKL 142 KYFSYIVI SP +K YPL+K Sbjct: 140 KYFSYIVIKSPFVKHHYPLEKF 161 >gi|300311014|ref|YP_003775106.1| leucine-responsive regulatory DNA-binding transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 162 Score = 105 bits (263), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 52/140 (37%), Positives = 83/140 (59%) Query: 1 LQRNGRMTNVDLSNEIGLSPSPCLHRVRRLEKAGYIAGYGAHIHLEKLGHVQFVFTQVTL 60 LQ++GR++ +L ++GLS +PC+ RVRR+E+ G I GY A ++ E LG VF ++TL Sbjct: 22 LQKDGRISMKELGEQVGLSVTPCIERVRRMERDGVITGYYARVNPESLGATLLVFVEITL 81 Query: 61 SGHTRGDFEKFETLVRDVDEIVECHLISGAFTYLLKFVTRDLGHYQRVAEDVLREKGNVE 120 + + FE+F V + E+ ECHL+SG F YL+K R + Y+++ D+L + Sbjct: 82 NHKSGNMFEQFRREVLRIPEVQECHLVSGDFDYLIKARIRGMAEYRKLLGDILLQLPGAA 141 Query: 121 KYFSYIVIASPSLKGQYPLD 140 + SY+V+ PLD Sbjct: 142 QSKSYVVMEEIKETLALPLD 161 >gi|300309515|ref|YP_003773607.1| leucine-responsive regulatory protein [Herbaspirillum seropedicae SmR1] Length = 154 Score = 103 bits (256), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 52/129 (40%), Positives = 83/129 (64%), Gaps = 2/129 (1%) Query: 1 LQRNGRMTNVDLSNEIGLSPSPCLHRVRRLEKAGYIAGYGAHIHLEKLGHVQFVFTQVTL 60 LQ +GR++NVDL+ + LSP+ CL RVR+L++AGYI GY A ++ E L VF +V L Sbjct: 15 LQNDGRISNVDLAARVNLSPAACLERVRKLQEAGYILGYAAQLNPELLDVSLLVFIEVVL 74 Query: 61 SGHTRGDFEKFETLVRDVDEIVECHLISGAFTYLLKFVTRDLGHYQR-VAEDVLREKGNV 119 T F +F+ V+ + EI+ECH+++G F YL+K +D+ Y+ + + +L+ KG V Sbjct: 75 DRTTPDVFAEFKKSVQSIPEIMECHMVAGGFDYLVKSRVKDMNAYREFLGKSLLQLKG-V 133 Query: 120 EKYFSYIVI 128 + +Y V+ Sbjct: 134 RETHTYAVM 142 >gi|300312490|ref|YP_003776582.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 153 Score = 81.3 bits (199), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 69/128 (53%) Query: 1 LQRNGRMTNVDLSNEIGLSPSPCLHRVRRLEKAGYIAGYGAHIHLEKLGHVQFVFTQVTL 60 LQ++GR+ N +L+ ++G+S + C + +RL + GY+ A + EKLG V V L Sbjct: 14 LQKDGRIGNAELAKKLGMSATACWNHTKRLMEEGYVKEVRAILDPEKLGLPVLVTVGVVL 73 Query: 61 SGHTRGDFEKFETLVRDVDEIVECHLISGAFTYLLKFVTRDLGHYQRVAEDVLREKGNVE 120 T F +FE VRD+ + EC L++G F Y +K +DL + R+ + L V Sbjct: 74 DRSTPESFAEFEKAVRDIAAVQECLLLAGEFDYWIKLRVKDLQAFNRLHANTLLRLPGVR 133 Query: 121 KYFSYIVI 128 + S+ V+ Sbjct: 134 QLRSFFVL 141 >gi|300313266|ref|YP_003777358.1| AsnC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 159 Score = 75.9 bits (185), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 42/102 (41%), Positives = 58/102 (56%) Query: 1 LQRNGRMTNVDLSNEIGLSPSPCLHRVRRLEKAGYIAGYGAHIHLEKLGHVQFVFTQVTL 60 LQ N ++N++L++ I LSPSP L RV+RLE G I+ Y A LG VF +V L Sbjct: 14 LQENSSISNLELASRINLSPSPTLARVKRLESEGIISRYVALADPHLLGLKVNVFVKVIL 73 Query: 61 SGHTRGDFEKFETLVRDVDEIVECHLISGAFTYLLKFVTRDL 102 +FET V DE++E +L++G YLL+ V DL Sbjct: 74 ERQGAEALAQFETAVSAFDEVMEVYLMTGDEDYLLRIVVPDL 115 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.141 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 453,808 Number of extensions: 17677 Number of successful extensions: 55 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 55 Number of HSP's successfully gapped: 9 Length of query: 147 Length of database: 1,619,870 Length adjustment: 77 Effective length of query: 70 Effective length of database: 1,255,275 Effective search space: 87869250 Effective search space used: 87869250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)