BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0062.p (269 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310494|ref|YP_003774586.1| amino acid ABC transporter/sign... 192 3e-50 gi|300311472|ref|YP_003775564.1| amino acid ABC transporter/sign... 77 1e-15 gi|300309409|ref|YP_003773501.1| glutamine ABC transporter perip... 72 4e-14 gi|300313610|ref|YP_003777702.1| amino acid ABC transporter/sign... 68 9e-13 gi|300310886|ref|YP_003774978.1| amino acid ABC transporter peri... 61 8e-11 >gi|300310494|ref|YP_003774586.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 192 bits (488), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 95/231 (41%), Positives = 143/231 (61%) Query: 37 AQAAGPAKVSAGTTPSSVPNAFLNIKTQQIEGVMPDVIREIGKREGFEISFDIVPFSALV 96 A A A + G T + VP FL+IKT +++G+M D + +G + GF ++ PF+AL+ Sbjct: 27 APAMAQASYNVGATSTGVPFTFLDIKTNKLQGMMVDTVTAVGNKAGFSVNIQQTPFAALI 86 Query: 97 QSVVSDKIDLIVAGMSPTPKRKEVVDFSEPVAEFGKGIIVSASDKKQYRTIQDLAGTVIG 156 S+ +KID+I A M T R ++VDFS+PV +G+G+ V+A D K Y+ + DL G ++G Sbjct: 87 PSLTGNKIDIIAAAMLKTEARAQIVDFSDPVYSYGEGLFVNAQDGKSYKNLDDLKGEIVG 146 Query: 157 AGAGEETSEELMKLGIFKEVKLYNTAADMARDVALGRITAGFNDYPIWKAQEANGALQGC 216 A G + L K G FKEVK Y++ ADM RDVALGRI AGF D PI Q A GA Sbjct: 147 AQVGTVFVDALNKKGGFKEVKTYDSVADMMRDVALGRIKAGFGDRPIVAYQLAQGANPQV 206 Query: 217 RVVDGFKPLRKVPIAFGVKKGNTALLTKINDGLVKIKADGTLDQILKKWNF 267 R+V ++P + ++KG+ L+ ++N + ++KADGTL +I+++W Sbjct: 207 RLVKEYQPTLMGDVCLVIRKGDPKLMERLNKAIAELKADGTLARIVEQWKL 257 >gi|300311472|ref|YP_003775564.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 77.4 bits (189), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 117/240 (48%), Gaps = 14/240 (5%) Query: 34 MTQAQAAGPAKVS-AGTTPSSVPNAFLNIKTQQIEGVMPDVIREIGKREGFEISFDIVPF 92 + +++G KV+ G P P F + KT ++ G DV + + + G + F + Sbjct: 30 LQSVKSSGTLKVALEGNYP---PFNFKDPKTGELTGFEVDVAKLLAAKLGVKPVFTTTEW 86 Query: 93 SALVQSVVSDKIDLIVAGMSPTPKRKEVVDFSEPVAEFGKGIIVSASDKKQYRTIQDLAG 152 S ++ + + K D+I+ + T +R++ DFS+P +IV +K+++++++DL G Sbjct: 87 SGILAGLGAGKYDVIINQVGITDERQKAFDFSDPYTLSSAQLIVRKDEKREFKSLEDLKG 146 Query: 153 TVIGAGAGEETSEELMKL-GIFKEVKLYNTAADMARDVALGRITAGFNDYPI--WKAQEA 209 +G G G ++ + GI +V+ Y + + D+A GRI A ND + + + Sbjct: 147 KKLGLGQGTNFEQKAKAVPGI--DVRTYPGSPEYLADLAAGRIDAALNDSLLVGYILKST 204 Query: 210 NGALQGCRVVDGFKPLRKVPIAFGVKKGNTALLTKINDGLVKIKADGTLDQILKKWNFVD 269 N L+ + + K+ I F +KGN +N L IKADG+ +KW +D Sbjct: 205 NLPLKAGSPIGA---VDKIGIPF--RKGNPEFKAALNKALADIKADGSFKAASEKWFGID 259 >gi|300309409|ref|YP_003773501.1| glutamine ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 259 Score = 72.4 bits (176), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 62/206 (30%), Positives = 103/206 (50%), Gaps = 9/206 (4%) Query: 64 QQIEGVMPDVIREIGKREGFEISFDIVPFSALVQSVVSDKIDLIVAGMSPTPKRKEVVDF 123 +++ G D+I+ I + F+I P+ + ++ D+I++G++ T KR ++VDF Sbjct: 48 KELVGFDIDLIKAISQASNFKIQLVSTPWEGIFATLGQGDRDIIISGITITDKRAQMVDF 107 Query: 124 SEPVAEFGKGIIVSASDKKQYRTIQDLAGT---VIGAGAGE-ETSEELMKLGIFKEVKLY 179 S P + +I++ +D K ++ DL T V+ + AG+ SEEL K + + Sbjct: 108 SLPYFP-AEQVIITNADAK-ITSLSDLKKTQVAVVNSTAGDIVVSEELGKAST--AIHRF 163 Query: 180 NTAADMARDVALGRITAGFNDYPIWKAQEANGALQGCRVVDGFKPLRKVPIAFGVKKGNT 239 + M ++ G + A D + K + + +VV K +R+ VKKGN Sbjct: 164 DNTVLMLEELYRGGVDAAVGDVGVIKFYIKSHPEKKFKVVGDSKFVRQY-FGIAVKKGNK 222 Query: 240 ALLTKINDGLVKIKADGTLDQILKKW 265 LL KIN GL KI ADGT +I K W Sbjct: 223 ELLDKINAGLKKIVADGTYAKIYKTW 248 >gi|300313610|ref|YP_003777702.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 271 Score = 67.8 bits (164), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 99/198 (50%), Gaps = 8/198 (4%) Query: 72 DVIREIGKREGFEISFDIVPFSALVQSVVSDKIDLIVAGMSPTPKRKEVVDFSEPVAEFG 131 D+++ + K+ G E+ F PF + DL+++ ++ T +RK+ V FSEP Sbjct: 75 DIMKALAKKIGIEVKFVPTPFEGFFNFLAQGDRDLLISAITITDERKKSVAFSEPYFVAT 134 Query: 132 KGIIVSASDKKQYRTIQDLAGTVIG---AGAGEETSEELMKLGIFKEVKLYNTAADMARD 188 + I + A+D K + ++DL +G A +G+E ++++ K +K +++ ++ Sbjct: 135 QTIALPAADTKVSK-MEDLKPLTVGTQSATSGDELVQQVLGKNSAK-IKRFDSTPLALKE 192 Query: 189 VALGRITAGFNDYPIWKAQEANGALQGCR-VVDGFKPLRKVPIAFGVKKGNTALLTKIND 247 + G + A D P+ K AN R V D P IA V+K + LL KIN Sbjct: 193 LESGGVDAVVADEPVVKNYIANNPNSKLRTVTDPSFPKEDYGIA--VRKDDPELLAKINK 250 Query: 248 GLVKIKADGTLDQILKKW 265 GL ++KADG+ I ++ Sbjct: 251 GLAEMKADGSFAAISAQY 268 >gi|300310886|ref|YP_003774978.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 61.2 bits (147), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 59/213 (27%), Positives = 94/213 (44%), Gaps = 28/213 (13%) Query: 65 QIEGVMPDVIREIGKREGFEISFDIVPFSALVQSVVSDKIDLIVAGMSPTPKRKEVVDFS 124 Q++G+ DV R + K G + VP S+ + + + KIDLI++ + +R++V+DFS Sbjct: 55 QLQGLDIDVARLVAKGMGVKAELVPVPISSRMAFLQTHKIDLIISTLGKNAEREKVIDFS 114 Query: 125 EPVAEFGKGIIVSASDKKQYRTIQDLAGTVIGAGAGEETSEELMKLGIFKE---VKLYNT 181 + A + + A+ K DLA + G T E+LM + +K Y Sbjct: 115 QGYAPYNNSVFGVAAIK--VAGPADLANQTV--GVARSTFEDLMLTDSVPKSTVIKRYED 170 Query: 182 AADMARDVALGRI----TAGFNDYPIWKAQEANGALQGCRVVDGFKPLRKVPI-----AF 232 + G++ T F Y + + AN KPL K I Sbjct: 171 NNGLIAAYVSGQVQLVGTGDFVAYALAEKTPAN------------KPLLKYIINVSTCYV 218 Query: 233 GVKKGNTALLTKINDGLVKIKADGTLDQILKKW 265 G+ KG AL+ K+N+ L K G L+ I+KKW Sbjct: 219 GMNKGEPALMAKVNEALTASKKSGELNGIVKKW 251 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 820,294 Number of extensions: 33441 Number of successful extensions: 139 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 8 Length of query: 269 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 185 Effective length of database: 1,222,130 Effective search space: 226094050 Effective search space used: 226094050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)