BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0061.p (218 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310495|ref|YP_003774587.1| amino acid ABC transporter perm... 233 1e-62 gi|300313167|ref|YP_003777259.1| amino acid ABC transporter perm... 137 8e-34 gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 134 6e-33 gi|300309410|ref|YP_003773502.1| glutamine ABC transporter perme... 124 6e-30 gi|300310828|ref|YP_003774920.1| amino acid ABC transporter perm... 124 9e-30 >gi|300310495|ref|YP_003774587.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 218 Score = 233 bits (593), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 126/218 (57%), Positives = 163/218 (74%) Query: 1 MRWNDMADFVPILLQGAGMTIFITLSCLVLSTLLGLVWALLKMSRHAPVRQVTATLINIV 60 M ++ DF+PILL+GA +T+ +T+ +LS+++GL+ AL+K+SR PV AT++NI+ Sbjct: 1 MLLQNVLDFLPILLKGALVTVEVTIYSFLLSSVIGLLLALMKVSRLKPVALAGATIVNII 60 Query: 61 RGLPMIVLLFYIYFVFPSIHIQLSALQASIIGLAFGYSTYVAEIIRSGIESVDMGQYEAA 120 RGLP+IV LFYIYFV P I IQLSA QA ++GL YS Y AE R+GIE+VDMGQ EAA Sbjct: 61 RGLPIIVQLFYIYFVLPDIGIQLSAFQAGVVGLGIAYSAYQAENFRAGIEAVDMGQIEAA 120 Query: 121 QSIGMGRVKTMTRVILPQAIKVALPPYSNTLVSMLKDSSLASTITVTEMTRQGTLLAAAT 180 QSIGM M RV+LPQA ++ALPPY NTLV MLKDSSL STITV EMTR G ++A++T Sbjct: 121 QSIGMRGPLIMRRVVLPQAFRIALPPYGNTLVMMLKDSSLVSTITVLEMTRAGQMIASST 180 Query: 181 FQNLEVYTLIAVGYLAMSLPLMSLTKMLERRFGKHKVK 218 FQN+ VYT +AV YL +SLPL+ L + LE R K + + Sbjct: 181 FQNMTVYTTVAVLYLLLSLPLVFLIRRLEIRNSKGRAR 218 >gi|300313167|ref|YP_003777259.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 137 bits (344), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 71/202 (35%), Positives = 122/202 (60%) Query: 10 VPILLQGAGMTIFITLSCLVLSTLLGLVWALLKMSRHAPVRQVTATLINIVRGLPMIVLL 69 V LLQ A T+ ++L V + G V AL ++S +A +R + + I +V+G+P++V+L Sbjct: 9 VEYLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQGIPLLVIL 68 Query: 70 FYIYFVFPSIHIQLSALQASIIGLAFGYSTYVAEIIRSGIESVDMGQYEAAQSIGMGRVK 129 F YF +L+ L A+ I A + ++ EI R I++V Q+EA++ +G R + Sbjct: 69 FVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASECLGFNRFE 128 Query: 130 TMTRVILPQAIKVALPPYSNTLVSMLKDSSLASTITVTEMTRQGTLLAAATFQNLEVYTL 189 +T+VILPQA+K+A PP +V ++K++SLAS I +++R G ++ +TFQ V+ Sbjct: 129 QLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQPFTVFGC 188 Query: 190 IAVGYLAMSLPLMSLTKMLERR 211 +A+ Y + PL +L+K ER+ Sbjct: 189 VALIYFCLCFPLSALSKHFERK 210 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 134 bits (337), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 125/208 (60%), Gaps = 1/208 (0%) Query: 11 PILLQGAGMTIFITLSCLVLSTLLGLVWALLKMSRHAPVRQVTATLINIVRGLPMIVLLF 70 P L +G G T+ L+ ++ +LG V A+ ++ P+ A ++++RG P++V +F Sbjct: 14 PTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMMRGTPLLVQIF 73 Query: 71 YIYFVFPSIHIQLSALQASIIGLAFGYSTYVAEIIRSGIESVDMGQYEAAQSIGMGRVKT 130 +Y+ P + I+ S L A ++ L+ S Y++E +R I V GQ+ AA S+G+ +T Sbjct: 74 VVYYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAAFSVGLTYFQT 133 Query: 131 MTRVILPQAIKVALPPYSNTLVSMLKDSSLASTITVTEMTRQGTLLAAATFQNLEVYTLI 190 + +I+PQA+++A+P SNTL+S++KD+SL S ITVTE+ + A TF+ L +Y Sbjct: 134 LRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVTFRPLPLYVAA 193 Query: 191 AVGYLAMSLPLMSLTKMLERRFGK-HKV 217 A Y +SL +L LE++ GK H++ Sbjct: 194 AAIYWMLSLCFEALQHRLEKKLGKAHQI 221 >gi|300309410|ref|YP_003773502.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 124 bits (311), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 128/250 (51%), Gaps = 36/250 (14%) Query: 1 MRWNDMADFVPILLQGAGMTIFITLSCLVLSTLLGLVWAL--LKMSRHA----------- 47 +W + +++P+ ++G MT+ + C++ T GLV + L +RH Sbjct: 5 FQWEIIGEYLPLFVEGTWMTLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLCYCVQ 64 Query: 48 -PVRQVTATLINIVRGLPMIVLLFYIYFVF------PS------------IHIQLSALQA 88 P+R ++ +RG P+ V + I+F PS I A + Sbjct: 65 WPIR----FYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFAS 120 Query: 89 SIIGLAFGYSTYVAEIIRSGIESVDMGQYEAAQSIGMGRVKTMTRVILPQAIKVALPPYS 148 +++ + YV+EI R+GI+S+D GQ EA++S+GM + T+ RV+LPQA + LPP Sbjct: 121 AVLAITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYLATLRRVVLPQAFRRMLPPLG 180 Query: 149 NTLVSMLKDSSLASTITVTEMTRQGTLLAAATFQNLEVYTLIAVGYLAMSLPLMSLTKML 208 N ++++KDSSLAS I + E+ ++ A + E Y I+V Y ++L L +L + L Sbjct: 181 NNAIAIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWLITLALSALVRHL 240 Query: 209 ERRFGKHKVK 218 E R+GK + Sbjct: 241 EARYGKGDAR 250 >gi|300310828|ref|YP_003774920.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 124 bits (310), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 122/209 (58%), Gaps = 1/209 (0%) Query: 8 DFVPILLQGAGMTIFITLSCLVLSTLLGLVWALLKMSRHAPVRQVTATLINIVRGLPMIV 67 +FV LL+ A T+ ++ + + G + AL++ S AP+R ++A I I++G P+++ Sbjct: 9 NFV-FLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQIIQGTPVLI 67 Query: 68 LLFYIYFVFPSIHIQLSALQASIIGLAFGYSTYVAEIIRSGIESVDMGQYEAAQSIGMGR 127 LLF ++ +L + A+ I + S Y+ EI R IE+V + Q+EA+ ++ M R Sbjct: 68 LLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEASTALAMTR 127 Query: 128 VKTMTRVILPQAIKVALPPYSNTLVSMLKDSSLASTITVTEMTRQGTLLAAATFQNLEVY 187 + + VILPQA++++LPP LV ++K++S+AS I + E+ + G L++ ATFQ V+ Sbjct: 128 WQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNATFQPFLVF 187 Query: 188 TLIAVGYLAMSLPLMSLTKMLERRFGKHK 216 ++A Y PL LER++ H+ Sbjct: 188 PIVAGIYFVFCYPLSRFAFALERKYHAHR 216 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.137 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 535,274 Number of extensions: 17424 Number of successful extensions: 139 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 128 Number of HSP's successfully gapped: 21 Length of query: 218 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 136 Effective length of database: 1,231,600 Effective search space: 167497600 Effective search space used: 167497600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)