BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0060.p (262 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 341 3e-95 gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 290 7e-80 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 263 1e-71 gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporte... 260 1e-70 gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPas... 259 2e-70 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 341 bits (875), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 167/240 (69%), Positives = 198/240 (82%) Query: 1 MIEIKNVTKNFGDFSVLKGISLEVKEGEVVCLIGASGSGKSTLLRCINALESYDSGEIRL 60 MIE+K ++K FG VLK +SL V +GEVVCLIG SGSGKST+LRCIN LESY+ G+I + Sbjct: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 Query: 61 LNQVVEQRSRHINQLRTQVGMVFQRFNLFPHRTALENVMEGPVHVKRLPVEQARREAIEM 120 Q V++ I++LRT+VGMVFQRFNLFPHRT LENV EGP++V L QAR EA+ + Sbjct: 61 DGQRVDRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQARSEAMSL 120 Query: 121 LNKVGLGQKIHAYPHQLSGGQQQRVAIARSLAMKPKAILFDEPTSALDPELVGEVLSVMR 180 L+KVGL + AYP QLSGGQQQRVAIARSLAM+P+AILFDEPTSALDPELVGEVL+VMR Sbjct: 121 LDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR 180 Query: 181 TLAREGMTMLVVTHEMGFAREVADRVCFLHAGLIIEEGEARQVLGAPREARTREFLRHVL 240 TLA +GMTM+VVTHEMGFAREVADRVCFLH+G I+E G A QVL P+ ART++FLR V+ Sbjct: 181 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDFLRRVI 240 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 290 bits (742), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 146/244 (59%), Positives = 184/244 (75%), Gaps = 8/244 (3%) Query: 1 MIEIKNVTKNFGDFSVLKGISLEVKEGEVVCLIGASGSGKSTLLRCINALESYDSGEIRL 60 MI++ + K FG +L+GI E++ EVVC+IG SGSGKST LRC+N LE G+I + Sbjct: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 Query: 61 LNQVVEQRSRHINQLRTQVGMVFQRFNLFPHRTALENVMEGPVHVKRLPVEQARREAI-- 118 + ++N LR ++GMVFQRFNLFPH T LEN++ P+ VK+L +RREA+ Sbjct: 61 EGVKLNDPKVNLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKL----SRREAVLV 116 Query: 119 --EMLNKVGLGQKIHAYPHQLSGGQQQRVAIARSLAMKPKAILFDEPTSALDPELVGEVL 176 ++L KVGL KI A+P+QLSGGQQQRVAIAR+LAM+PK +LFDEPTSALDPELVGEVL Sbjct: 117 AEKLLQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVL 176 Query: 177 SVMRTLAREGMTMLVVTHEMGFAREVADRVCFLHAGLIIEEGEARQVLGAPREARTREFL 236 +VM+ LA EGMTM+VVTHEMGFAREV+DRV F+ G+I+EEG +QVLG P RTR+FL Sbjct: 177 TVMKQLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGDPHHERTRDFL 236 Query: 237 RHVL 240 R VL Sbjct: 237 RKVL 240 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 263 bits (671), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 132/236 (55%), Positives = 162/236 (68%) Query: 1 MIEIKNVTKNFGDFSVLKGISLEVKEGEVVCLIGASGSGKSTLLRCINALESYDSGEIRL 60 ++EI N+TK FG VL GISL V+ G+VV +IG SGSGKST+LRCIN LE+ D G I + Sbjct: 3 IVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSITV 62 Query: 61 LNQVVEQRSRHINQLRTQVGMVFQRFNLFPHRTALENVMEGPVHVKRLPVEQARREAIEM 120 + + H+ +LR VGMVFQ +NLFPH T EN+M P VK+ E AR AI++ Sbjct: 63 AGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAIKV 122 Query: 121 LNKVGLGQKIHAYPHQLSGGQQQRVAIARSLAMKPKAILFDEPTSALDPELVGEVLSVMR 180 L +VGL K AYP QLSGGQQQRVAIARSLAM+P+ +LFDE TSALDPEL EVL VM Sbjct: 123 LKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVME 182 Query: 181 TLAREGMTMLVVTHEMGFAREVADRVCFLHAGLIIEEGEARQVLGAPREARTREFL 236 LAR GMTML+VTHEM FAR VAD F+H G + E + + P+ R+F+ Sbjct: 183 ELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFI 238 >gi|300313537|ref|YP_003777629.1| polar amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 260 bits (664), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 133/236 (56%), Positives = 167/236 (70%) Query: 1 MIEIKNVTKNFGDFSVLKGISLEVKEGEVVCLIGASGSGKSTLLRCINALESYDSGEIRL 60 +I I NV K FGD VLKGISL+V+ GEV+ +IG SGSGKSTLLRCIN LES D G I + Sbjct: 3 LIAIDNVKKRFGDNEVLKGISLDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGNISV 62 Query: 61 LNQVVEQRSRHINQLRTQVGMVFQRFNLFPHRTALENVMEGPVHVKRLPVEQARREAIEM 120 + + LR +VGM+FQ+FNLFPH + NVM P+ VK + +A + A Sbjct: 63 AGAKLGASELELRNLRLKVGMIFQQFNLFPHLSVGRNVMIAPMIVKGVSEAEAMKTAKAN 122 Query: 121 LNKVGLGQKIHAYPHQLSGGQQQRVAIARSLAMKPKAILFDEPTSALDPELVGEVLSVMR 180 L KVGLG K AYP QLSGGQQQRVAIAR+L+M P+A+L DE TSALDPELV EVL+VMR Sbjct: 123 LEKVGLGHKFDAYPDQLSGGQQQRVAIARALSMSPQALLCDEITSALDPELVNEVLTVMR 182 Query: 181 TLAREGMTMLVVTHEMGFAREVADRVCFLHAGLIIEEGEARQVLGAPREARTREFL 236 LA+EGMT+L+VTHEM FAREV +R+ F+H G + E G ++ G P+ ++F+ Sbjct: 183 GLAKEGMTLLMVTHEMRFAREVCNRLVFMHQGKVHEIGPPEELFGNPKTPELQQFI 238 >gi|300312808|ref|YP_003776900.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 259 bits (662), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 135/239 (56%), Positives = 171/239 (71%) Query: 1 MIEIKNVTKNFGDFSVLKGISLEVKEGEVVCLIGASGSGKSTLLRCINALESYDSGEIRL 60 M+E K+V+K FG VL GI+L +++GEVV LIG SGSGKSTLLRCINALE D G++ + Sbjct: 1 MVEFKSVSKRFGSNVVLDGINLTIRKGEVVVLIGPSGSGKSTLLRCINALEEIDGGDLLV 60 Query: 61 LNQVVEQRSRHINQLRTQVGMVFQRFNLFPHRTALENVMEGPVHVKRLPVEQARREAIEM 120 V S + +R + GMVFQ+FNLFP TALENV GP HV+ E+A A E+ Sbjct: 61 DGISVLSGSSSVRAIRQEAGMVFQQFNLFPQLTALENVAFGPRHVRGASSEEANALASEL 120 Query: 121 LNKVGLGQKIHAYPHQLSGGQQQRVAIARSLAMKPKAILFDEPTSALDPELVGEVLSVMR 180 L KVGL ++ H YP++LSGGQQQRVAIAR+LA++PK +LFDEPTSALDPEL EVL VM+ Sbjct: 121 LAKVGLAERKHHYPNELSGGQQQRVAIARALAVRPKLMLFDEPTSALDPELRQEVLRVMQ 180 Query: 181 TLAREGMTMLVVTHEMGFAREVADRVCFLHAGLIIEEGEARQVLGAPREARTREFLRHV 239 +LA EGMTM+VVTHE+ FAR V R+ F+ G I +G +++ R REFL+HV Sbjct: 181 SLAEEGMTMIVVTHEISFARRVGTRLIFMENGHIAIDGNPGELIENSCNPRLREFLKHV 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 707,607 Number of extensions: 27747 Number of successful extensions: 551 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 314 Number of HSP's successfully gapped: 145 Length of query: 262 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 179 Effective length of database: 1,226,865 Effective search space: 219608835 Effective search space used: 219608835 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)