BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0058.p
         (139 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis tra...   202   7e-54
gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen...    82   1e-17
gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis tra...    77   6e-16
gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis tra...    75   2e-15

>gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 597

 Score =  202 bits (514), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 89/130 (68%), Positives = 110/130 (84%)

Query: 1   MLTSIRARVICAFVALVVFSVVVSTAANYLIARNSMWDATDSSLSTSLNDHARVIGDWVA 60
           ML+S+RARVICA + LV+ SV++STAANYLIAR  +  ATD  L+T+++ HA VIGDW+A
Sbjct: 1   MLSSLRARVICALILLVISSVLISTAANYLIARKGLNAATDDDLATAVDQHAAVIGDWLA 60

Query: 61  EKTRLVDSLQDVVLTDSPDAMLKQIQVAGGFFDVGVGYPDKKTKFTDWPNIPATYDPTTR 120
            K++++ SL+D+ LT  PDAMLKQIQVAGGF+DVGVGYPDK+ KFTDWPNIPATYDPTTR
Sbjct: 61  GKSKMIASLEDISLTSDPDAMLKQIQVAGGFYDVGVGYPDKRAKFTDWPNIPATYDPTTR 120

Query: 121 PWYKGAVXLG 130
           PWYKG +  G
Sbjct: 121 PWYKGVLQAG 130


>gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis
           sensory transducer protein [Herbaspirillum seropedicae
           SmR1]
          Length = 684

 Score = 82.4 bits (202), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 2/130 (1%)

Query: 1   MLTSIRARVICAFVALVVFSVVVSTAANYLIARNSMWDATDSSLSTSLNDHARVIGDWVA 60
           ML+S+RAR+I   V +V  ++++ +AAN    R+   +A  S        HA  I +WV 
Sbjct: 1   MLSSLRARLIFICVLIVALAMIILSAANIFTVRSDTLEAISSQTQQLTESHAANISEWVR 60

Query: 61  EKTRLVDSLQDVVLTDSPDAMLKQIQVAGGFFDVGVGYPDKKTKFTDWPNIPATYDPTTR 120
            K  +  +++  +       ++   Q AG F D  +GYPDK  +      +PA YDPT R
Sbjct: 61  SKRVVTGAMKQALKQSDVLPIVAAAQEAGSFDDAYIGYPDK--RMLALHPMPAGYDPTAR 118

Query: 121 PWYKGAVXLG 130
           PWYK AV  G
Sbjct: 119 PWYKQAVEAG 128


>gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 598

 Score = 77.0 bits (188), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 41/130 (31%), Positives = 67/130 (51%)

Query: 1   MLTSIRARVICAFVALVVFSVVVSTAANYLIARNSMWDATDSSLSTSLNDHARVIGDWVA 60
           M  SI+AR++   + L++ S+ V    ++ I +     A + +  +  +     I +WVA
Sbjct: 1   MFNSIKARILFYTITLLIASLAVVGTVSFFIIKLDNDRAIERNAESVASGFGSTINEWVA 60

Query: 61  EKTRLVDSLQDVVLTDSPDAMLKQIQVAGGFFDVGVGYPDKKTKFTDWPNIPATYDPTTR 120
            +T +  +  D VL   P  ++K +Q +GGF+   +G  DK    +    +PA YDPT R
Sbjct: 61  ARTAMTVAAADGVLNADPVFVIKTLQKSGGFYVTTLGKEDKTAFTSAAEGLPAGYDPTAR 120

Query: 121 PWYKGAVXLG 130
           PWYK AV  G
Sbjct: 121 PWYKQAVAAG 130


>gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 625

 Score = 75.1 bits (183), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/124 (31%), Positives = 60/124 (48%)

Query: 3   TSIRARVICAFVALVVFSVVVSTAANYLIARNSMWDATDSSLSTSLNDHARVIGDWVAEK 62
           TS+R R+I     +VV +++     N+L AR+      D+ ++      A  I +W   K
Sbjct: 23  TSLRTRLIALCAGIVVLAMLAIVLTNFLTARSRTMSTLDTQMTQLAQSQAAAIAEWSDSK 82

Query: 63  TRLVDSLQDVVLTDSPDAMLKQIQVAGGFFDVGVGYPDKKTKFTDWPNIPATYDPTTRPW 122
             +V S+++      P   +K  Q AGGF    +GY DK   F+   +    YDPT RPW
Sbjct: 83  KLVVTSIKEAADAADPLPFVKAAQTAGGFDLAYLGYADKHAVFSQQRSRAPDYDPTKRPW 142

Query: 123 YKGA 126
           Y+ A
Sbjct: 143 YQQA 146


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 394,469
Number of extensions: 14507
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 4
Length of query: 139
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 63
Effective length of database: 1,260,010
Effective search space: 79380630
Effective search space used: 79380630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)