BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0057.p (446 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis tra... 627 0.0 gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis tra... 371 e-104 gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis tra... 345 4e-96 gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sen... 339 3e-94 gi|300310169|ref|YP_003774261.1| methyl-accepting chemotaxis tra... 253 3e-68 >gi|300309601|ref|YP_003773693.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 627 bits (1617), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/445 (75%), Positives = 382/445 (85%) Query: 1 VMREGKLKAVLVGDVALDSVVETIKAIHPTPESFGMLIDKNGRIIAHPNAELRFKQATDI 60 VMR+G LKAV+VGDVALDSVVE IK+IHPTP SFGML+++ GRIIAHP+A+LRFKQA+++ Sbjct: 152 VMRDGVLKAVVVGDVALDSVVENIKSIHPTPSSFGMLVEQGGRIIAHPDAQLRFKQASEL 211 Query: 61 APEFAQLSSAADDRASAPMKIVVDGRAKLVRAQKIRGTDWSIVIAIDESEAMAGARSLLN 120 APEF+ L+ A P+ IVVDGR KLVR Q + GTDW+IV+AID+ EA AG R+LL Sbjct: 212 APEFSDLNVANAGPGQPPVHIVVDGREKLVRVQAVPGTDWNIVVAIDQQEASAGVRALLA 271 Query: 121 TSLLSLILIVGIASVIGVAVTATAFRRLGQVSQAMAAIGSGSGDLTQRLPDQGKDEVAVI 180 +SLLSL+ +V AS+IG AVTATAFRRLGQ+S AM AIGSGSGDLTQRLPD G+DEVA+I Sbjct: 272 SSLLSLVAVVIAASLIGAAVTATAFRRLGQISAAMTAIGSGSGDLTQRLPDHGRDEVAII 331 Query: 181 SRSFNQFVGQLQNVMLDIRDASEAVRTASNEIATANQDLSTRTESAAASLEQTAASMAEI 240 ++SFN FV +LQ+VM DIRDA E VR AS+EIA AN DLS RTESAAASLEQTAASMAEI Sbjct: 332 AQSFNAFVAKLQSVMRDIRDAGETVRVASDEIAAANHDLSVRTESAAASLEQTAASMAEI 391 Query: 241 SETVGRSTAAAKQADQRSSSATEIASQGGKVVSDAVTTIGEIEKVSGQIGAIITVIDGIA 300 S TV RS AA +ADQRSS+AT IASQGGKVVSDAV T+GEIEKVS QIG II+VIDGIA Sbjct: 392 SATVDRSATAAHEADQRSSAATGIASQGGKVVSDAVATMGEIEKVSAQIGDIISVIDGIA 451 Query: 301 FQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAKRSAEAAREVKELVETTVSRVSAGS 360 FQTNILALNAAVE+ARAGEQGRGFAVVAHEVR+LA+RSA AAREVK+LVE T+SRV+AGS Sbjct: 452 FQTNILALNAAVESARAGEQGRGFAVVAHEVRNLAQRSAGAAREVKDLVEATISRVAAGS 511 Query: 361 VQVRQAGTTMGEIVTQSADVQSLISGIARATDEQMRGIQEVNRAVIQLDSMVQQNAALVE 420 QVRQAG TM +IVT + DVQS I+ IAR T EQ RGIQEVN+AVIQLD MVQQNAALVE Sbjct: 512 QQVRQAGGTMRDIVTHTDDVQSAIADIARTTTEQTRGIQEVNQAVIQLDGMVQQNAALVE 571 Query: 421 QSAAASATLQAQANTLASTIGRFRI 445 +SAAAS+TLQ QAN LA+TI RFRI Sbjct: 572 ESAAASSTLQQQANVLAATIARFRI 596 >gi|300313825|ref|YP_003777917.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 598 Score = 371 bits (952), Expect = e-104, Method: Compositional matrix adjust. Identities = 221/454 (48%), Positives = 324/454 (71%), Gaps = 18/454 (3%) Query: 1 VMREGKLKAVLVGDVALDSVVETIKAIHPTPESFGMLIDKNGRIIAHPNAELRFKQATD- 59 VM+ G+ V+ + LD V + +++IHPTP SF L+D++G ++AHP+ + K A + Sbjct: 154 VMQNGQRAGVVAAAMFLDGVSDVVRSIHPTPASFAFLVDRDGLMLAHPDGQWVNKPAKEW 213 Query: 60 ---IAPEFAQLSS-AADDRASAPMKIVVDGRAKLVRAQKIRGTDWSIVIAIDESEAMAG- 114 + PE +L++ AADD+AS +++++G AKLV+ I+GT+W++++A+D+++ AG Sbjct: 214 NAELTPE--RLNALAADDKAS---EVMLEGAAKLVKGVPIKGTEWTLMLAMDKADVTAGL 268 Query: 115 ---ARSLLNTSLLSLILIVGIASVIGVAVTATAFRRLGQVSQAMAAIGSGSGDLTQRLPD 171 +RS L +L ++ GI S+I AV F+RL +V +AM + SG+GDLT RL + Sbjct: 269 RNASRSALIALVLVALVAAGIMSLITTAV----FQRLSRVRRAMDNLSSGNGDLTLRLTE 324 Query: 172 QGKDEVAVISRSFNQFVGQLQNVMLDIRDASEAVRTASNEIATANQDLSTRTESAAASLE 231 G DEV ISRSFN FV Q+ ++ D+R +S+ V+ +S EIAT NQDLS RTE A +LE Sbjct: 325 DGSDEVTQISRSFNTFVNQITGILQDVRRSSDTVKISSTEIATGNQDLSARTEQQAGALE 384 Query: 232 QTAASMAEISETVGRSTAAAKQADQRSSSATEIASQGGKVVSDAVTTIGEIEKVSGQIGA 291 +TA++M E++ TV +++ A++A++ + +A++IA+QGG+VV + V+T+ I S QI Sbjct: 385 ETASAMEELTSTVQQNSENARRANELAGNASKIAAQGGEVVGNVVSTMEAINASSRQIAD 444 Query: 292 IITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAHEVRSLAKRSAEAAREVKELVET 351 IITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLA+RSA+AA+E+K L+++ Sbjct: 445 IITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIDS 504 Query: 352 TVSRVSAGSVQVRQAGTTMGEIVTQSADVQSLISGIARATDEQMRGIQEVNRAVIQLDSM 411 +VS+V+ G V V QAG TM +IV DV ++S IA A+ EQ GIQEVN A+ +D Sbjct: 505 SVSKVADGGVLVTQAGQTMEQIVASIRDVSVIVSEIAHASAEQNGGIQEVNLAITHIDEG 564 Query: 412 VQQNAALVEQSAAASATLQAQANTLASTIGRFRI 445 QQNAALVEQ+AAA+ +LQ +A+ L+ +G F++ Sbjct: 565 TQQNAALVEQAAAAARSLQDEAHRLSVLVGGFKM 598 >gi|300310309|ref|YP_003774401.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 625 Score = 345 bits (885), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 197/428 (46%), Positives = 279/428 (65%), Gaps = 1/428 (0%) Query: 19 SVVETIKAIHPTPESFGMLIDKNGRIIAHPNAELRFKQATDIAPEFAQLSSAADDRASAP 78 +VV + AI PTP S+ L D +G+IIAHPN +LR K D+ + R Sbjct: 192 TVVADVVAIKPTPNSYAFLADLSGKIIAHPNDKLRLKPLADLDAAITPQTLDEAMRTGVH 251 Query: 79 MKIVVDGRAKLVRAQKIRGTDWSIVIAIDESEAMAGARSLLNTSLLSLILIVGIASVIGV 138 + +DGR +++ ++ GTDW +V+A+D ++A+A ++L +S + +L+ +A+++ Sbjct: 252 QDVALDGRRQMLFVARVGGTDWLLVVALDRADALASLSAMLVSSGVMAVLVTVLAALVLG 311 Query: 139 AVTATAFRRLGQVSQAMAAIGSGSGDLTQRLPDQGK-DEVAVISRSFNQFVGQLQNVMLD 197 A+ + RL V A+ I G GDLT+RL G+ DE+ I +FN+FV ++++VM+D Sbjct: 312 ALISRLLGRLTVVQGALEEIADGDGDLTRRLDTHGRSDELGRIGAAFNRFVDKIEHVMID 371 Query: 198 IRDASEAVRTASNEIATANQDLSTRTESAAASLEQTAASMAEISETVGRSTAAAKQADQR 257 IRDAS + AS +IA+ N DLS RTES A+SLEQTAA+M +++ +V + A QA+Q Sbjct: 372 IRDASHTIHAASRDIASGNMDLSQRTESQASSLEQTAAAMEQLTSSVRHNADNAMQANQL 431 Query: 258 SSSATEIASQGGKVVSDAVTTIGEIEKVSGQIGAIITVIDGIAFQTNILALNAAVEAARA 317 S SA++IA+QGG +V V T+ I S +I II+VIDGIAFQTNILALNAAVEAARA Sbjct: 432 SQSASQIATQGGTMVEQVVQTMNGINASSQKIVDIISVIDGIAFQTNILALNAAVEAARA 491 Query: 318 GEQGRGFAVVAHEVRSLAKRSAEAAREVKELVETTVSRVSAGSVQVRQAGTTMGEIVTQS 377 GEQGRGFAVVA EVRSLA+RSA AA+E+K L+ +V +V AG V QAG T+ +V Sbjct: 492 GEQGRGFAVVASEVRSLAQRSATAAKEIKVLITDSVGQVQAGEDTVAQAGATIRSVVDSV 551 Query: 378 ADVQSLISGIARATDEQMRGIQEVNRAVIQLDSMVQQNAALVEQSAAASATLQAQANTLA 437 V +++ I A+ EQ +GI + N AV +D QQNAALVEQ+AA + +LQ QA LA Sbjct: 552 QKVSDVVAEITAASREQSQGINQANDAVAHMDQTTQQNAALVEQAAAGAQSLQEQAERLA 611 Query: 438 STIGRFRI 445 + FR+ Sbjct: 612 GIVALFRL 619 >gi|300312458|ref|YP_003776550.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 684 Score = 339 bits (869), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 216/443 (48%), Positives = 292/443 (65%), Gaps = 5/443 (1%) Query: 4 EGKLKAVLVGDVALDSVVETIKAIHPTPESFGMLIDKNGRIIAHPNAELRFKQATDIAPE 63 + L+AVL DV LD+VV T+ I PTP SF ++ K+G II HPN EL K + + Sbjct: 155 KSNLQAVLGSDVQLDNVVRTVAGIKPTPSSFAFIVGKDGVIITHPNKELALKPVSSLDQT 214 Query: 64 FAQLSSAADDRASAPMKIVVDGRAKLVRAQKIRGTDWSIVIAIDESEAMAGARSLLNTSL 123 + S A + + + G L+ Q I TDWS+V+A+D EA +L+ S Sbjct: 215 LSAQSLAGMKQGGSA---TIGGIRYLLFTQPIANTDWSLVVALDYREATHAIGALMTLST 271 Query: 124 LSLILIVGIASVIGVAVTAT-AFRRLGQVSQAMAAIGSGSGDLTQRLPDQGKDEVAVISR 182 + +L + +AS I ++ T T RRLG V AM I SG GDLT+RL GKDE+A ISR Sbjct: 272 VLAVLAI-VASAILLSYTITRLLRRLGVVRNAMEEIASGDGDLTRRLDTSGKDELAQISR 330 Query: 183 SFNQFVGQLQNVMLDIRDASEAVRTASNEIATANQDLSTRTESAAASLEQTAASMAEISE 242 +FN F ++ +LDIR ASE+V+ +S+EIA+ N DLS RTE A SLE+TA++M E++ Sbjct: 331 AFNHFADKISRTLLDIRRASESVKVSSSEIASGNMDLSARTEQQAGSLEETASAMEELTS 390 Query: 243 TVGRSTAAAKQADQRSSSATEIASQGGKVVSDAVTTIGEIEKVSGQIGAIITVIDGIAFQ 302 TV ++ A+QA+Q + SA+++A GG+VV V T+ I + S +I II+VIDGIAFQ Sbjct: 391 TVKQNADNARQANQLAVSASDVAVHGGQVVGQVVATMSSINESSRKIVDIISVIDGIAFQ 450 Query: 303 TNILALNAAVEAARAGEQGRGFAVVAHEVRSLAKRSAEAAREVKELVETTVSRVSAGSVQ 362 TNILALNAAVEAARAGEQGRGFAVVA EVRSLA+RSA AA+E+K L++ +V +V GS Sbjct: 451 TNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKGLIDDSVQKVETGSQL 510 Query: 363 VRQAGTTMGEIVTQSADVQSLISGIARATDEQMRGIQEVNRAVIQLDSMVQQNAALVEQS 422 V QAG+TM E+V+ V ++ I+ A+ EQ GI EV AV Q+D QQNAALVEQ+ Sbjct: 511 VAQAGSTMEEVVSSVRRVTDIVGEISAASQEQSSGITEVGNAVNQMDEATQQNAALVEQA 570 Query: 423 AAASATLQAQANTLASTIGRFRI 445 AAA+ +LQ QA LA+ + F++ Sbjct: 571 AAAAKSLQEQAAHLAAVVAGFKL 593 >gi|300310169|ref|YP_003774261.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 657 Score = 253 bits (645), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 173/365 (47%), Positives = 237/365 (64%), Gaps = 7/365 (1%) Query: 84 DGRAKLVRAQKIRGTDWSIV--IAIDE-SEAMAGARSLLNTSLLSLILIVGIASVIGVAV 140 DGR K++ G W I A+DE + ++ R+L L L+ + +A+++ V V Sbjct: 297 DGRKKILAFTYYPGWHWVIAGEAAVDEITREVSSMRNLYIG--LGLLFLAVLAAILTVMV 354 Query: 141 TATAFRRLGQVSQAMAAIGSGSGDLTQRLPDQGKDEVAVISRSFNQFVGQLQNVMLDIRD 200 R L V QA I SG DLT RL DE+ + +FN L V+ +R Sbjct: 355 NRMVSRPLDAVCQAADRIASG--DLTTRLHVHSSDEIGRLMGAFNGISMGLSEVVSSVRA 412 Query: 201 ASEAVRTASNEIATANQDLSTRTESAAASLEQTAASMAEISETVGRSTAAAKQADQRSSS 260 +E + TA++EIA+ N +LS RTE A +LE+TA++M E++ TV ++ A A+QAD+ SS+ Sbjct: 413 GTEEINTAASEIASGNLNLSVRTEQQAGALEETASAMEELTSTVKQNAANAEQADELSSA 472 Query: 261 ATEIASQGGKVVSDAVTTIGEIEKVSGQIGAIITVIDGIAFQTNILALNAAVEAARAGEQ 320 A+E+AS GG+VV V T+ I S +I II+VIDGIAFQTNILALNAAVEAARAGEQ Sbjct: 473 ASEVASHGGEVVGQVVQTMDAINSSSQRIVDIISVIDGIAFQTNILALNAAVEAARAGEQ 532 Query: 321 GRGFAVVAHEVRSLAKRSAEAAREVKELVETTVSRVSAGSVQVRQAGTTMGEIVTQSADV 380 GRGFAVVA EVR+LA+RSA AA+E+KEL++ +V V+ G V QAG TM ++V+ V Sbjct: 533 GRGFAVVATEVRTLAQRSAAAAKEIKELIDASVQTVAGGGQLVTQAGNTMNDVVSSVQRV 592 Query: 381 QSLISGIARATDEQMRGIQEVNRAVIQLDSMVQQNAALVEQSAAASATLQAQANTLASTI 440 ++IS I A+ EQ GI ++NRA+ Q+D QQNAALVEQ+AAA+ +LQ QA LA+ + Sbjct: 593 STVISEITTASREQSEGIDQINRAIAQMDESTQQNAALVEQAAAAAQSLQQQAERLAAAV 652 Query: 441 GRFRI 445 FRI Sbjct: 653 STFRI 657 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.125 0.317 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 941,293 Number of extensions: 30840 Number of successful extensions: 428 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 255 Number of HSP's successfully gapped: 71 Length of query: 446 Length of database: 1,619,870 Length adjustment: 88 Effective length of query: 358 Effective length of database: 1,203,190 Effective search space: 430742020 Effective search space used: 430742020 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)