BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0055.p
         (473 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311412|ref|YP_003775504.1| threonine synthase [Herbaspiril...   579   e-166

>gi|300311412|ref|YP_003775504.1| threonine synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 486

 Score =  579 bits (1492), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 294/487 (60%), Positives = 348/487 (71%), Gaps = 18/487 (3%)

Query: 1   MNYISTRGDRTQRGFSEVLLEGLAPDGGLYVPLAYPRIDDATLQAWRTLSYPDLAFEIMA 60
           M Y+STRG      FSE+LL GLAPDGGLY+P  YP++  A L  WR LSY DLAFE++ 
Sbjct: 1   MQYVSTRGHAATPSFSEILLGGLAPDGGLYLPAQYPQVSGAELDQWRKLSYADLAFEVLR 60

Query: 61  LYVGDIPAGQLRSAIARTYTAEIF-------GSADIVPLRPLED----GLFVLGLSNGPT 109
            +  DIP   L++   +TYTA+++        +A+I PLR LE+     L +  LSNGPT
Sbjct: 61  KFATDIPEADLKALAHKTYTADVYRNTRAGEHAAEITPLRTLEEQGGKKLVLQSLSNGPT 120

Query: 110 FAFKDVAMQLLGNLLDDELGRRGEQLNIVGATSGDTGSAAEYAMRGKKNIQVFMLSPHGR 169
            AFKD+AMQLLGNL +  L ++G +LNIVGATSGDTGSAAEYAMRGKK I+VFMLSPH +
Sbjct: 121 LAFKDMAMQLLGNLFEYALAKQGAELNIVGATSGDTGSAAEYAMRGKKGIRVFMLSPHKK 180

Query: 170 MSPFQQAQMFSLQDRNIHNMAVEGSFDTCQDIVKAISSDLGFKRRFHIGTVNSINWARLL 229
           MS FQ AQMFSLQD NI N+A+EG FD CQDIVKAIS+DL +K    IGTVNSINWAR++
Sbjct: 181 MSAFQTAQMFSLQDPNIFNLAIEGVFDDCQDIVKAISNDLEYKAAKKIGTVNSINWARVV 240

Query: 230 AQVVYYFAGYFQATRSNGERVSFAVPSGNFGNICAGHVARMMGLPIDKLVLATNENDVLD 289
           AQVVYYF GY  AT SN ++VSF VPSGNFGNICAGH+ARMMGLPIDKLV+ATNENDVLD
Sbjct: 241 AQVVYYFRGYLAATTSNEQKVSFTVPSGNFGNICAGHIARMMGLPIDKLVVATNENDVLD 300

Query: 290 EFFRTGCYRPRSSAETPATSSPSMDIAKASNLERFIFDVLGRDAQSVQQLFGEELAHHGK 349
           EFFRTG YR R SAET  TSSPSMDI+KASN ERF++D+LGRD+  V+ LF  ++   G 
Sbjct: 301 EFFRTGIYRVRKSAETYHTSSPSMDISKASNFERFVYDLLGRDSARVKDLF-HKVETAGG 359

Query: 350 FILSKQ------EHERMADYGFVSGKSTHADRLATISQVWSGRSMMIDPHTADGVKVARH 403
           F LS Q      E   +  YGF SG+STHADRL TI        + +D HTADG+KVAR 
Sbjct: 360 FDLSGQAGSDGNEFTSVIQYGFASGRSTHADRLETIRFAEKTYGITVDTHTADGIKVARE 419

Query: 404 HRVQGVPTIVLETALPLKFEETMRAATGRGVPRPAALADLEARPRLFAVMQASTEDIKER 463
           H   GV  IVLETALP KF ET+R A GR   RPA   ++EA P+ F VM A    +K  
Sbjct: 420 HLTPGVTMIVLETALPAKFNETIREALGRDADRPAGFENIEALPQRFEVMPADAARVKAY 479

Query: 464 IATSCGL 470
           +A   GL
Sbjct: 480 VAQHTGL 486


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,431,705
Number of extensions: 58983
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 384
Effective length of database: 1,198,455
Effective search space: 460206720
Effective search space used: 460206720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)