BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0047.p (532 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore... 90 5e-19 gi|300310824|ref|YP_003774916.1| hydroxamate-type ferrisideropho... 85 1e-17 gi|300310281|ref|YP_003774373.1| TonB-dependent siderophore rece... 79 1e-15 gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein... 75 2e-14 gi|300311652|ref|YP_003775744.1| TonB-dependent siderophore rece... 74 3e-14 >gi|300309529|ref|YP_003773621.1| TonB dependent ferrisiderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 704 Score = 89.7 bits (221), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 127/504 (25%), Positives = 204/504 (40%), Gaps = 42/504 (8%) Query: 1 LQETPQAVTVMTRQRMDDQQLNSVQGVLDNTTGITSYQSDSERTSFYSRGFLINNVQYDG 60 L++ PQ + V+ Q + DQ +S+Q VL N G+ D +R + RGF Sbjct: 64 LRDVPQTINVVPAQVIRDQNASSLQDVLKNVPGLGLSTGDGQRDQVFIRGF--------- 114 Query: 61 IPTVVGNT-VNGSGISAI---DTAFYDCVEVVRGASGLLTGTGNPSAAINLVRKRPTRDF 116 T +G+ V+G A+ D + + VEV++G + +L G G+ IN V K+P D Sbjct: 115 --TAIGDQFVDGFRDDALYFRDLSNVESVEVIKGPAAVLYGRGSSGGLINRVTKKPGVDV 172 Query: 117 SASASLSAGSWDTHRAMADLSTPLTADGRIRARLVGSYQDGHSYIDGYKPEKKSFYGIVE 176 S S +A S RA DL +G + RL G+ + G S+ ++ + V Sbjct: 173 S-DVSFTANSTAGRRAELDLGR--AGEGALSWRLTGAVERGDSFRAQQFIDRTAIAPSVA 229 Query: 177 ADLTSHTTVSLGYD---DQHITSTG-ATWGGLPLWFSDGTQADYASSKSYAQDWSQWNTT 232 ++ T + L D D+ + G ++ G P+ GT Y + + D+ Q + Sbjct: 230 LRFSADTKLLLQMDYLEDRRMMDFGIPSYRGRPVDVDPGTT--YGARNARDADFVQ--SR 285 Query: 233 LKTAFAELDHRFDNGWKLHATASQYRTEFNAELLGLVGRPDRATGLGTYPFGAYPVALAS 292 + + A HRF++ + Y N G + AT T L Sbjct: 286 VASTTATFTHRFNDEFSFRNGLRYYDYHLNRNNTN-GGTVNEATATTTLNHA----KLVR 340 Query: 293 QGSSRTNTFDVMMAGPFDLLGRHHEAVVGAMTSRRTSGENDIAPFYAGFMPVNINELSTP 352 + N ++ L HE + G + S + A F V+I P Sbjct: 341 DENGWFNQSELTQK--LQLGSIRHEILYGLELGSQ-SKDASQASGVVNFPGVSIFNPVLP 397 Query: 353 FARPDFAAMPSVPTSTGIKQSGVYGAARLSLADPLKLIVGARVSNYEIDNSV-----GGA 407 P+ P++ T Y LSL++ K +VG R Y + + G Sbjct: 398 VVDPNRLNPPTLTYGT-YDTFATYLQDSLSLSEQWKALVGLRYDRYRQQSRILNLANGST 456 Query: 408 AMRYEKNGVFTPYAGLVYDINRIYSAYLSHTRIFNPQTD-YQDSKGNV-LTPATGKTTEI 465 A + +P AGLV+ + S YLS +R F P + + + N L P + TE Sbjct: 457 ADLQRTDTAVSPRAGLVWQPSLTQSYYLSWSRSFQPSGESFALATNNADLAPEQTRNTEA 516 Query: 466 GLKGAYLEGRLHASVALFETRLDN 489 G K + EGR A+V++F DN Sbjct: 517 GAKYDFWEGRASATVSVFRLERDN 540 >gi|300310824|ref|YP_003774916.1| hydroxamate-type ferrisiderophore receptor signal peptide protein, tonB-dependent receptor [Herbaspirillum seropedicae SmR1] Length = 715 Score = 85.1 bits (209), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 123/515 (23%), Positives = 206/515 (40%), Gaps = 61/515 (11%) Query: 1 LQETPQAVTVMTRQRMDDQQLNSVQGVLDNTTGITSYQSDSER-TSFYSRGFLINNVQY- 58 L ETPQ+++V+TR MD QQ S+ L N +G+ + Q RG + ++ Y Sbjct: 77 LSETPQSISVVTRAMMDSQQAVSLSDALKNVSGVVAQQYGRRGWDDLIIRGQVASDSLYL 136 Query: 59 DGIPTVVGNTVNGSGISAIDTAFYDCVEVVRGASGLLTGTGNPSAAINLVRKRPTRDFSA 118 DG+ T + V A VEV++G LL G P +N+V KRP A Sbjct: 137 DGLRTTASSRV------AEQLYGLQQVEVLKGPGSLLYGLVLPGGLVNMVSKRPQGSDFA 190 Query: 119 SASLSAGSWDTHRAMADLSTPLTADGRIRARLVGSYQDGHSYIDGYKPEKKSFYGIVEAD 178 + ++ GS D +++ DL+ L+ +G+ R+ G + D + + + D Sbjct: 191 NVDVTIGSHDLYQSTVDLNKSLSENGKQAFRINGLISNSDDATDHVWFKNRYIAPSLSLD 250 Query: 179 LTSHT--TVSLGYDDQHITSTGATWGGLPLWFSDGTQADYASSKSY------AQDWSQWN 230 L + T T+ Y +++ GLPL S A ++S A+ ++ Sbjct: 251 LGARTDFTILTSYQERNYVRQ----QGLPLSGSITPNASGPLARSLFIGEPGARPYAANE 306 Query: 231 TTLKTAFAELDHRFDNGWKLHATASQYRTEFNAELLGLVGRPDRATGLGTYPFGAYPVAL 290 T + + L HRFD+GW L+ + + +L+ + + TG A+ Sbjct: 307 TRIGYS---LTHRFDDGWTLNNNLRYQQFTMSGQLISI----NNLTGT-----SLTRSAM 354 Query: 291 ASQGSSRTNTFDVMMAGPFDLLGRHHEAVVGA--MTSRRTSGENDIAPFYAGFMPVNINE 348 +T T D + F HE +G M SR + ++ Sbjct: 355 DQTFEGQTFTMDTNVQRSFATAWGKHEVTLGTDYMNSRELERT----------LTCSVTP 404 Query: 349 LSTPFARPDFAAMPSVPTS----------TGIKQSGVYGAARLSLADPLKLIVGA---RV 395 LS + P + A PT T ++ +G Y ++SL + +L+ G R Sbjct: 405 LSNIY-NPSYGARVVCPTQLTSTNAKLNDTSVRDTGFYARDKISLGERWQLLAGVRQDRA 463 Query: 396 SNYEIDNSVGGAAMRYEKNGVFTPYAGLVYDINRIYSAYLSHTRIFNPQTDYQDSKGNVL 455 + Y G + + A ++ ++ YLS+ F P + G++ Sbjct: 464 ATYTTSALTGSHSDNASSATTAS--AAIMVELWHGVRPYLSYATSFYPNSG-TAFDGSIF 520 Query: 456 TPATGKTTEIGLKGAYLEGRLHASVALFETRLDNA 490 P TGK E G+K EGR + ALF+ R N Sbjct: 521 KPETGKQWETGVKVDLDEGRTSINFALFDLRRRNV 555 >gi|300310281|ref|YP_003774373.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 715 Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 128/509 (25%), Positives = 205/509 (40%), Gaps = 64/509 (12%) Query: 1 LQETPQAVTVMTRQRMDDQQLNSVQGVLDNTTGITSYQS-DSERTSFYSRGFLINNVQY- 58 L E PQ+V VMT Q++DD + +D +GI+ +F RGF ++ + Sbjct: 78 LLELPQSVRVMTTQQIDDLGAVRLADTVDYVSGISRLNDFGGTWDNFAIRGFSSTDMGFL 137 Query: 59 -DGIPTVVGNTVNGSGISAIDTAFYDCVEVVRGASGLLTGTGNPSAAINLVRKRPTRDFS 117 +G P G DTA + +E ++G + L G+ P IN+V K+P S Sbjct: 138 VNGFPGSRGYNPRR------DTATIERIEFLKGPASALYGSSEPGGTINIVTKKPQFSAS 191 Query: 118 ASASLSAGSWDTHRAMADLSTPLTADGRIRARLVGSYQDGHSYIDGYKPEKKSFYGIVEA 177 SA +SAG+ RA D + PL+ + + RL+ ++G S ++S A Sbjct: 192 NSAEVSAGTGGLRRATVDSTGPLSQN--LAYRLIAMTEEGDSR-SSLLSNRRSLVAPSLA 248 Query: 178 DLTSHTTVSLGYD----------DQHITSTGATWGGLPL-----WFSDGTQADYASSKSY 222 + T+ L Y+ D+ I + GGLP SDG A +++ Sbjct: 249 WVIDKNTL-LNYEGEFLQASTPLDRGIINVRGVLGGLPRDRVLSEPSDGNMAMRSNTHQL 307 Query: 223 AQDWS---QWNTTLKTAFAELDHRFDNGWKLHATASQYRTEFNAELLGLVGRPDRATGLG 279 + S QW L ++ E FD + T ++ R A+L L DR G Sbjct: 308 TLEHSLSEQWRMRLGASYKE--SSFDG----YYTEAKLRNPLQADLRTL----DRT---G 354 Query: 280 TYPFGAYPVALASQGSSRTNTFDVMMAGPFDLLGRHHEAVVGAMTSRRTSGENDIAPFYA 339 T+ Q SR + + G F H +VGA S+ + Sbjct: 355 TW----------RQLPSRDMSIQGELHGQFKTGDIAHTFLVGAEASKLWMNTEILRS--T 402 Query: 340 GFMPVNINELSTPFARPDFAAMPSVPTSTGIKQ--SGVYGAARLSLADPLKLIVGARVSN 397 +P++I ARP A+ +S+ Q ++ +LSL+ KL+ G R Sbjct: 403 TLLPIDIYNPIYGAARP---ALDDRTSSSDENQRVKALFVQDQLSLSPQWKLLGGLRWDQ 459 Query: 398 YE--IDNSVGGAAMRYEKNGVFTPYAGLVYDINRIYSAYLSHTRIFNPQTDYQDSKGNVL 455 Y + + V ++ +P AG+ Y N S YLS + F + D G Sbjct: 460 YNQSVVSRVAPVGTTSQRQSAVSPRAGISYLPNAWSSVYLSAGKSFRGNSGV-DVNGRPF 518 Query: 456 TPATGKTTEIGLKGAYLEGRLHASVALFE 484 P + E GLK + RL A+ A+++ Sbjct: 519 DPQRSTSYEAGLKLQSTDERLGANFAVYD 547 >gi|300311660|ref|YP_003775752.1| TonB-dependent receptor protein [Herbaspirillum seropedicae SmR1] Length = 705 Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 125/508 (24%), Positives = 192/508 (37%), Gaps = 65/508 (12%) Query: 3 ETPQAVTVMTRQRMDDQQLNSVQGVLDNTTGITSYQSDSERTSFYSRGFLINNVQYDGIP 62 E PQ+V+V+TR MD + + S+ VL G ++SE RG+ N++ Sbjct: 67 EVPQSVSVVTRDEMDARGVTSLLDVLRYMPG-----ANSETHGVDPRGYEYFNLRGFINA 121 Query: 63 TVVGNTVNG-----SGISAIDTAFY--DCVEVVRGASGLLTGTGNPSAAINLVRKRPTRD 115 V N +NG G T Y + +EV+RG + G +P IN V K P D Sbjct: 122 QVTSNFLNGLRQIPGGFGQFRTETYGMERIEVLRGPGSVTFGQADPGGVINRVSKLPGMD 181 Query: 116 FSASASLSAGSWDTHRAMADLSTPLTADGRIRARLVGSYQDG---HSYIDGYKPEKKSFY 172 + GS++ + +ADL+ T DG R+VG D + + +G + FY Sbjct: 182 IPNELGVDIGSFNRKQVVADLNGH-TQDGEYLWRVVGLGLDSNNQYKFNNGQSGDNNRFY 240 Query: 173 GIVEADLT----SHTTVSLGYDDQHITSTGATWGGLPLWFSDG---TQADYASSKSYAQD 225 + LT + T+++L D + S + W + G T Q Sbjct: 241 --LAPSLTWRPSASTSLTLMADYMNDRSGSSRWTAV----RPGNVLTHTLIGDPNFDRQS 294 Query: 226 WSQWNTTLKTAFA-ELDHRFDNGWKLHATASQYRTEFNAELLGLVGRPDRATGLGTYPFG 284 QW +F + +H+FDN W Q A L + A GT Sbjct: 295 NDQW------SFGYQFEHKFDNAWTFRQNFRQ------ANLKSVYA----ALNPGTLTGS 338 Query: 285 AYPVALASQGSSRTNTF-DVMMAGPFDLLGRHHEAVVGAMTSRRTSGENDIAPFYAGFMP 343 S NT D + G H + G SR E Y G P Sbjct: 339 VLTRGTTVYNSQVDNTLVDNQLEGRLKWGATEHTVLFGLDWSRMYDRE----VRYRGAAP 394 Query: 344 -VNINE----LSTPFARPDFAAMPSVPTSTGIKQSGVYGAARLSLADPLKLIVGARVSNY 398 +NI+ ++ P A F + + Q+G+Y ++ L L +G R Sbjct: 395 SLNIDNPVYGVTIPAATTLFGNL-----EENMNQTGLYAQDQIKFDQRLTLTLGGRWDKV 449 Query: 399 --EIDNSVGGAAMRYEKNGVFTPYAGLVYDINRIYSAYLSHTRIFNPQTDYQDSKGNVLT 456 E N R + + + GL Y + R + Y+S+ F PQT D G Sbjct: 450 KDETRNYFNRTTTRSD-DSALSGRIGLSYLVTRDIAPYVSYATSFLPQTG-SDFNGKPFD 507 Query: 457 PATGKTTEIGLKGAYLEGRLHASVALFE 484 P + E+G+K +G+ + ALFE Sbjct: 508 PTKARQAEVGIKYQPADGKTLFTAALFE 535 >gi|300311652|ref|YP_003775744.1| TonB-dependent siderophore receptor protein [Herbaspirillum seropedicae SmR1] Length = 832 Score = 73.9 bits (180), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 125/517 (24%), Positives = 203/517 (39%), Gaps = 67/517 (12%) Query: 1 LQETPQAVTVMTRQRMDDQQLNSVQGVLDNTTGITSYQSDSERTSFYSRGFLINNVQYDG 60 L E Q+V+V+TR M+ + NS+ VL G +++E RG+ N++ Sbjct: 192 LLELAQSVSVVTRAEMEARGANSILDVLRYMPG-----ANTETHGVDPRGYDYFNLRGFI 246 Query: 61 IPTVVGNTVNG-----SGISAIDTAFY--DCVEVVRGASGLLTGTGNPSAAINLVRKRPT 113 N +NG SG T Y + VEV+RGA+ G +P +N V K Sbjct: 247 NAQTTSNYLNGLRQIPSGFGMFRTETYGLERVEVLRGANSASFGQADPGGVVNRVSKLAG 306 Query: 114 RDFSASASLSAGSWDTHRAMADLSTPLTADGRIRARLVGSYQDGHS---YIDGYKPEKKS 170 + GS+ + ADLS L +GR++ARLVG DG + Y +G + Sbjct: 307 SGARNELMVDVGSFQRRQVAADLSGDLDPEGRVQARLVGLLLDGDTQFRYANGRAGDNDR 366 Query: 171 FYGIVEADLTSHTTVSLGYDDQHIT--STGATWGGLPLWFSDGTQ-----ADYASSKSYA 223 Y + SL +++ S W + +DG+Q D + Sbjct: 367 LYLAPSLKIRPSADTSLILLAEYLKDRSGSGRWTAV---RADGSQTHTLLGDPDFDQQRG 423 Query: 224 QDWSQ-WNTTLKTAFAELDHRFDNGWKL--HATASQYRTEFNAELLGLVGRPDRATGLGT 280 + WS W L+HR D W L H + R+++ A G + Sbjct: 424 EQWSLGW---------MLEHRLDATWTLRQHFRQAALRSQYAAVNPGSFNGSILSRSTAV 474 Query: 281 YPFGAYPVALASQGSSRTNTFDVMMAGPFDLLGRHHEAVVGAMTSRRTSGENDIAPFYAG 340 Y L +Q +R H+ ++G S ++ E Y G Sbjct: 475 YDTQVENTLLDNQALARVQWGQA-----------EHQVLLGLDWSHMSAREQR----YRG 519 Query: 341 FMPVNINELSTPFARPDFAAMPSVPTSTG-----IKQSGVYGAARLSLADPLKLIVGARV 395 P +++ + + +P +P+ T G + Q+G+Y ++ + L +GAR Sbjct: 520 VAP-SLDIDNPVYTQP----IPAATTRFGDLDQTLVQTGLYAQDQIRY-QRIVLTLGARY 573 Query: 396 --SNYEIDNSVGGAAMRYEKNGVFTPYAGLVYDINRIYSAYLSHTRIFNPQTDYQDSKGN 453 S N+ + E+N F+ GL Y ++ + Y+S+ F PQ QD G Sbjct: 574 DRSRDSTRNAANNSLQAAEENA-FSGRVGLSYLVSPELAPYVSYGSSFLPQAG-QDVDGK 631 Query: 454 VLTPATGKTTEIGLKGAYLEGRLHASVALFETRLDNA 490 AT + E G+K GR + AL++ DNA Sbjct: 632 PFKAATARQIEAGVKYQPGHGRAVYTAALYQLVKDNA 668 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.130 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,779,036 Number of extensions: 79196 Number of successful extensions: 262 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 248 Number of HSP's successfully gapped: 14 Length of query: 532 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 442 Effective length of database: 1,193,720 Effective search space: 527624240 Effective search space used: 527624240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)