BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0042.p
         (596 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313886|ref|YP_003777978.1| amino acid ABC transporter peri...    56   8e-09

>gi|300313886|ref|YP_003777978.1| amino acid ABC transporter
           periplasmic protein [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 9/235 (3%)

Query: 357 DLVHQLAPTGVLRASINLGNPVLASLDPQSGRAQGVSVDLARELGQRLGVPVELVVGKTA 416
           D +  +   G +R +     P+    D +   A G  V+ AR L Q LGV ++L+    A
Sbjct: 29  DQLDDIKKAGKIRIATTSSTPLFGYSDEKLQLA-GSDVEAARLLAQDLGVQLDLIPVANA 87

Query: 417 AGSVANLEEGRADI--GFFAIDPRRAREIAFTRPYVLIEGYYAVRADSPIHDNAQVDRPG 474
           A  V  L+  RADI  G  +I P R + I F+ PY +I           I D A  D  G
Sbjct: 88  A-RVPTLQANRADIVVGSLSITPERLKVIDFSTPYAVISLIIGAPKSMVIKDYA--DLNG 144

Query: 475 LTVAVGSGSAYDLFLSRELKQATIVRTPTSNAVVPTFVERRLDVAAGVKQQLQADAAKVG 534
             + V   +  D   ++  K A I+R      ++ + V  ++DV +     LQ    K  
Sbjct: 145 KRIGVTRATPNDTLTTQNAKGAEIMRYEDDATLITSMVTGQVDVFSSTPSNLQEMQKKAP 204

Query: 535 GLRILDQRFMVIRQAMGTPAARGE-KARAYLAAFVEEMTSSGVVAAALAR-HGID 587
           G + L+ +F      +G    + + + + ++  +V+    +G + A   + HG D
Sbjct: 205 G-KNLEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKTNMKNGKLNAIYKKYHGRD 258


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,967,591
Number of extensions: 89180
Number of successful extensions: 332
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 505
Effective length of database: 1,188,985
Effective search space: 600437425
Effective search space used: 600437425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)