BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0040.p
         (505 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312234|ref|YP_003776326.1| argininosuccinate lyase [Herbas...   103   4e-23

>gi|300312234|ref|YP_003776326.1| argininosuccinate lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 464

 Score =  103 bits (256), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 149/316 (47%), Gaps = 15/316 (4%)

Query: 84  ITFEPLLIQAAGPQITLLHAGRSSQDMLATLRAAILREDLLTLANQLNATTAALVRLAAS 143
           +  E  L +  G     LH GRS  D +AT     +R  +  +   L     AL+ LA  
Sbjct: 93  LNIEKRLTELVGDAGKRLHTGRSRNDQVATDIRLYMRGAVDDIIGLLRELRLALLDLAEQ 152

Query: 144 QRDTIVPNYTNGVAAQPNSYGHYLLGFAAALDRDAQRLREAYGRLDRSAMGTTVLNGTSW 203
             DTI+P +T+   AQP ++GH++L +     RDA+R+ +A  R++R  +G   L GT++
Sbjct: 153 HADTILPGFTHMQVAQPITFGHHVLAYVEMFGRDAERMIDARKRINRLPLGAAALAGTTF 212

Query: 204 PLNRQRMADYLGFAAIVDNAYDAAQLSAVDGPVEAGAVVSSIALHAGAFIQDVMTQYAQP 263
           P++R R+A  LGF  +  N+ DA  +S  D  +E  A  + +  H     ++++  +  P
Sbjct: 213 PIDRLRVAKTLGFDDVCRNSLDA--VSDRDFAIEFCAGAALVMTHISRMSEELVI-WMSP 269

Query: 264 RPWILLQEGGANTYV--SSAMPQKRNPGLLNSTRRDASMVIAEGMGVAIVAHNIPPGMSD 321
           R   +     A+ +   SS MPQK+NP +    R     V    + +  +    P  ++ 
Sbjct: 270 RVGFI---DIADRFCTGSSIMPQKKNPDVPELARGKTGRVNGHLIALLTLMKGQP--LAY 324

Query: 322 AKDVKPNKEMVLNTVKVLKNWESILG----ALVIDPKRALEELNSDWTASQELADVLMRK 377
            KD + +KE + +TV  L +   I       + + P+         +  + +LAD L++K
Sbjct: 325 NKDNQEDKEPLFDTVDTLTDTLRIFADMARGISVKPEAMRAAALQGYATATDLADYLVKK 384

Query: 378 YKLPFRVGHHFASEVV 393
             LPFR  H   +  V
Sbjct: 385 -GLPFRDAHEAVAHAV 399


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,429,912
Number of extensions: 55564
Number of successful extensions: 211
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 2
Length of query: 505
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 416
Effective length of database: 1,198,455
Effective search space: 498557280
Effective search space used: 498557280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)