BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0037.p
         (302 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310628|ref|YP_003774720.1| hypothetical protein Hsero_1296...   196   2e-51

>gi|300310628|ref|YP_003774720.1| hypothetical protein Hsero_1296
           [Herbaspirillum seropedicae SmR1]
          Length = 551

 Score =  196 bits (498), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/163 (61%), Positives = 118/163 (72%), Gaps = 2/163 (1%)

Query: 9   FYYLSNFQQALDWLGQRYADLLQDEERDFLQRFPALPLAARALFVRMMMRKGEHFRASRL 68
           FYYL NFQQ LDWL QR ADLL   ER F+  FP LPL +RALFVRMMMRKGE FR+ RL
Sbjct: 7   FYYLDNFQQVLDWLAQRCADLLDLRERQFIVAFPGLPLPSRALFVRMMMRKGELFRSGRL 66

Query: 69  AYPEIGCPLQASRDLPPEWVEQDAPLSLAQVFALATKPELLRWFGVRGALKTARKDSLLA 128
            YPEIGCPL+A++ LP +WVE+DA L+L Q F+L+TKPEL+R F + GA + ARK  LLA
Sbjct: 67  DYPEIGCPLEAAKGLPEDWVERDAALTLEQFFSLSTKPELVRAFALTGAQRAARKTDLLA 126

Query: 129 ALVSDPQHAAPRCLSQWTAPGQGGEAVLRMRVGSLCERLRLMF 171
            L +DP     R L QW    QG E  LR+RV  LC+RLRLMF
Sbjct: 127 QLAADPAWDQARVLRQWCR--QGDELALRLRVQDLCDRLRLMF 167


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.133    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 901,667
Number of extensions: 32335
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,217,395
Effective search space: 264174715
Effective search space used: 264174715
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)