BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0036.p
         (202 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310628|ref|YP_003774720.1| hypothetical protein Hsero_1296...   299   1e-82

>gi|300310628|ref|YP_003774720.1| hypothetical protein Hsero_1296
           [Herbaspirillum seropedicae SmR1]
          Length = 551

 Score =  299 bits (766), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 146/203 (71%), Positives = 166/203 (81%), Gaps = 1/203 (0%)

Query: 1   VLPAEGGR-VERAVQLHLQQADAPVFYVENALPNALFGLLCWEALFAPIPGAFFHPFQRE 59
           VL  + G+ VE AV+ HLQ  DAPVFYVEN L  ALFGLLCW+A+FA IPGAFFHPFQRE
Sbjct: 349 VLAMQAGQGVEAAVRAHLQAPDAPVFYVENTLATALFGLLCWDAIFAAIPGAFFHPFQRE 408

Query: 60  PADLLSADFAARRRDVLARCLRRFDDGSYRAHLLAIHESKHGLQSPFVAWGWVTRELLVM 119
           PADL SADF ARRR+  A CL R D   +R  +LA +E K G+ SPFV+WG ++R LLV+
Sbjct: 409 PADLHSADFHARRREAFAHCLARLDQERHREAILAAYEDKQGVLSPFVSWGAISRGLLVL 468

Query: 120 ALDCIPAAHLKLWCLRILDDIRENRNGFPDLIQFWPQQGRYRMIEVKGPGDRLQDNQRRW 179
           ALDCIPA HLK WCLRIL+D+RENR+GFPDLIQFWPQQ RYRMIEVKGPGDRLQDNQ+RW
Sbjct: 469 ALDCIPAWHLKHWCLRILEDVRENRSGFPDLIQFWPQQRRYRMIEVKGPGDRLQDNQQRW 528

Query: 180 LDYCAQHAMPVAVCYLQWEQAAA 202
           L +CAQH MPVAVCYLQW+Q  A
Sbjct: 529 LAFCAQHQMPVAVCYLQWQQQVA 551


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.477 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 701,223
Number of extensions: 28123
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,236,335
Effective search space: 149596535
Effective search space used: 149596535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)