BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0035.p
         (491 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310629|ref|YP_003774721.1| ATP-dependent Rad3-related DNA ...   676   0.0  

>gi|300310629|ref|YP_003774721.1| ATP-dependent Rad3-related DNA
           helicase c2 [Herbaspirillum seropedicae SmR1]
          Length = 763

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/392 (84%), Positives = 354/392 (90%)

Query: 15  APRYTVSVRALCEFTAKQGDLDLRFTPTPTAQEGIAGHAIVAQRRGEGYLSEVTLSADHG 74
           A RYTVSVRALCEFTAK GDLDLRFTPTPTA++G+ GHAIVA RRGE Y SE+ L+ DHG
Sbjct: 9   ARRYTVSVRALCEFTAKAGDLDLRFTPTPTARQGMEGHAIVASRRGEHYQSELALAIDHG 68

Query: 75  ALHVRGRADGYDPARQLLEEVKTYRGQLSSLPDNHRHLHWAQLRVYGHLMCEREGLARIH 134
           ALHVRGRADGYD  RQLLEEVKTYRGQL+S+PDNHRHLHWAQLRVYGHL+C+ +GL R++
Sbjct: 69  ALHVRGRADGYDADRQLLEEVKTYRGQLASIPDNHRHLHWAQLRVYGHLLCQAQGLERVN 128

Query: 135 LALVYFDIGSQQETVLEETRSREELATLFAAQCERFMCWAEQELAHRAARDTALQTLRFP 194
           LALVYF+IGSQQET LEE+RSREELA LF A CERF+ WA QELAHR ARD AL+ LRFP
Sbjct: 129 LALVYFEIGSQQETRLEESRSREELAELFGALCERFIGWAAQELAHRQARDAALEQLRFP 188

Query: 195 HGDFRPGQRQLAEAVFRAQTGRRSLLAQAPTGIGKTLGTLFPALKAAPAQRLDKILFLAA 254
           HGDFRPGQRQLAEAVFRA  GRRSLLAQAPTGIGKTLGTLFPALKAAP Q+LDK+LFLAA
Sbjct: 189 HGDFRPGQRQLAEAVFRAHAGRRSLLAQAPTGIGKTLGTLFPALKAAPRQQLDKVLFLAA 248

Query: 255 KTPGRQLALDAAATLKDHGELPLRVLELCARDKACEYPDRLCRGDSCPLAQGFYDRLPAA 314
           KTPGRQLALDAAATLK  G LPLRVLEL AR+KACE+P+RLCRGDSCPLAQGFYDRL  A
Sbjct: 249 KTPGRQLALDAAATLKGQGVLPLRVLELSAREKACEHPERLCRGDSCPLAQGFYDRLAQA 308

Query: 315 RAACLSQPLLDREHLRSVALQHQVCPYYLGSEMTRWSDVIVGDYNYWFDGGAMLYGMAQA 374
           RAACL  PLLDR  LR +AL HQVCPYYLGSEMTRWSDVIVGDYNYWFDGGAMLY MAQA
Sbjct: 309 RAACLDAPLLDRASLRQIALAHQVCPYYLGSEMTRWSDVIVGDYNYWFDGGAMLYAMAQA 368

Query: 375 HDWRVSVLADEAHNLVSRARSMYSAQLSRAAL 406
           HDWRVSVLADEAHNLV+RAR MYSAQLSRA+L
Sbjct: 369 HDWRVSVLADEAHNLVARARGMYSAQLSRASL 400


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,388,924
Number of extensions: 57317
Number of successful extensions: 187
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 402
Effective length of database: 1,198,455
Effective search space: 481778910
Effective search space used: 481778910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)