BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0034.p
         (231 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310629|ref|YP_003774721.1| ATP-dependent Rad3-related DNA ...   362   e-101

>gi|300310629|ref|YP_003774721.1| ATP-dependent Rad3-related DNA
           helicase c2 [Herbaspirillum seropedicae SmR1]
          Length = 763

 Score =  362 bits (930), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/222 (79%), Positives = 193/222 (86%)

Query: 1   VLCIRNVVPAPFLGPRFAFAHATTLFSATLAPWNYFADLLGMPANTAWIDVESPFQASQL 60
           VL +RNVVPAPFLGPRFA AHATTLFSATL PW+YFADLLGMP +TAWIDVESPF ASQL
Sbjct: 503 VLAVRNVVPAPFLGPRFAQAHATTLFSATLGPWHYFADLLGMPKDTAWIDVESPFHASQL 562

Query: 61  QVKVAHQISTTWQRRAASIAPICELMARQYEERPGNYLAFFSSFDYLQQARDAFARAHPH 120
           +V+VA  IST WQRR+ASIAPI  LMARQ+ +RPGNYLAFFSSFDYLQQA  AF RAHP 
Sbjct: 563 EVRVAQDISTRWQRRSASIAPITALMARQFHQRPGNYLAFFSSFDYLQQALAAFTRAHPD 622

Query: 121 IATWQQSRRMSETDRDAFLARFESAGQGIGFAVLGGSFGEGVDLPGDRLIGAFVATLGLP 180
           I TWQQSR MSE +R+AFLARF   G+GIGFAVLGGSFGEGVDLPG+RLIGAFVATLGLP
Sbjct: 623 IPTWQQSRGMSEAEREAFLARFVVGGRGIGFAVLGGSFGEGVDLPGERLIGAFVATLGLP 682

Query: 181 QFNPVNEQLRERMEQLFGCGYDYTYLYPGMQKVVQXSLFLLR 222
           Q N VNEQLR RM+ LFG GYDYTYLYPG+QKVVQ +  ++R
Sbjct: 683 QVNEVNEQLRLRMQALFGAGYDYTYLYPGLQKVVQAAGRVIR 724


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 770,305
Number of extensions: 32770
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,231,600
Effective search space: 183508400
Effective search space used: 183508400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 129 (54.3 bits)