BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0018.p (1158 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310633|ref|YP_003774725.1| SMC domain-containing protein [... 1392 0.0 gi|300310632|ref|YP_003774724.1| hypothetical protein Hsero_1300... 331 3e-91 >gi|300310633|ref|YP_003774725.1| SMC domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 937 Score = 1392 bits (3602), Expect = 0.0, Method: Compositional matrix adjust. Identities = 717/805 (89%), Positives = 754/805 (93%), Gaps = 6/805 (0%) Query: 354 GLPHRAQRRRLAAPLLHEPPXRAIARVLALEQGQTDRLCEFSPKELLRLVFEVFGDQEVL 413 GL H R+RL L RAIARVLALEQGQTDRLCEFSPKELLRLVFEVFGDQEVL Sbjct: 139 GLDH--WRKRLEGAGL----SRAIARVLALEQGQTDRLCEFSPKELLRLVFEVFGDQEVL 192 Query: 414 DRYEEARRHQRDLAAEVTLAEQELAYSEAQLAQLDSRVTLYRTYQGKLRERETLATEVIP 473 DRYEEARRHQRDLAAEVTLAEQELAYSEAQLAQLDSRVTLYR YQGKLRERETLATEVIP Sbjct: 193 DRYEEARRHQRDLAAEVTLAEQELAYSEAQLAQLDSRVTLYRQYQGKLRERETLATEVIP 252 Query: 474 VLRWHEERQGTATRLRELHRQRLHHNHLRRQRSSDTLLLSSLLTQQQAAREKVTALERDK 533 VLRWHEERQGTA RLRELHRQRLHHN RRQRSSDTL LS+LLTQQQAAREKV LERDK Sbjct: 253 VLRWHEERQGTAHRLRELHRQRLHHNSQRRQRSSDTLQLSALLTQQQAAREKVATLERDK 312 Query: 534 AEAQQAQQKARDAEKPVEELVKQADELLALSAVEGDATQLLARVEELEQQKSTLHDRWRD 593 AEAQQAQQKARDAEKPVEELVKQADELLALSAVEGDA QLLARVEELEQ KS LHDRWR Sbjct: 313 AEAQQAQQKARDAEKPVEELVKQADELLALSAVEGDAAQLLARVEELEQNKSDLHDRWRA 372 Query: 594 LEQQRKDASGALDRLTGQRLAPRPNDVQQFTRALRQAGIAHHLLADVIEIADDQWRAAAE 653 LEQQRKDA AL+R++GQR AP+P DVQQFTR+LRQAGIAHH+LADVIEI+DD WRAAAE Sbjct: 373 LEQQRKDAQEALERVSGQRQAPKPGDVQQFTRSLRQAGIAHHILADVIEISDDHWRAAAE 432 Query: 654 GVLRASCWVVVLDDPKDEAAAMALAERERYRHYVVSDAATATSQPPAESLLAVLRFSAKA 713 GVLRASCWVVVL+DPKDEAAAMALAERERYRHYVV+DAA+A +P A+SLLAVLRFSAKA Sbjct: 433 GVLRASCWVVVLEDPKDEAAAMALAERERYRHYVVADAASAPDKPNADSLLAVLRFSAKA 492 Query: 714 PSWLLRQLAQIRRVADTVEGASSGGEWITPQAYWRDGRGGRSVWRDPGDYQFGAAAMAAR 773 PSWLLRQLAQIRRV DTVEGAS GGEWITPQAYWRDGRGGRSVWRDPGDYQFGAAAMA+R Sbjct: 493 PSWLLRQLAQIRRVDDTVEGASVGGEWITPQAYWRDGRGGRSVWRDPGDYQFGAAAMASR 552 Query: 774 QASIQKRLATLDEQLTDIVLKQSEVKRQLDAAKKATEGHLAAEALAKRSEEFEQARRQLP 833 QASIQKRLA+LDEQLTDIVLKQSEVKRQLDAAKKAT+GHLAAEALA+RSEEFE+ARRQLP Sbjct: 553 QASIQKRLASLDEQLTDIVLKQSEVKRQLDAAKKATQGHLAAEALARRSEEFEEARRQLP 612 Query: 834 ALKAARVAASERWSQFDAQYADAIEQRTILDGKLDALQRRLRDSEGDLAGQERDWRVRHD 893 +L+ AR+AASERWSQ D +A AIEQRTI+DGK AL+RRLR+SEGDLAGQER+WRVRHD Sbjct: 613 SLRQARMAASERWSQLDLHHAAAIEQRTIIDGKHAALERRLRESEGDLAGQEREWRVRHD 672 Query: 894 EQRARALASRAQKGRFPAHWIATATVQALYEKYSNAKQAELRMASVENELETGHWEKDGT 953 EQRARALASRAQK FP WI+ A++Q LYEKY+NAKQAELRM SVENELE+G WEKDGT Sbjct: 673 EQRARALASRAQKAGFPQRWISGASLQLLYEKYTNAKQAELRMTSVENELESGQWEKDGT 732 Query: 954 VEDKHLIMQGTVGNQRNELDSRKISNHQAEEAVGNARERYIDVLRATVRRYRKNIVDLGA 1013 VEDKHLIMQGTVGNQRNELD+RKISN QAEEAVGNARERYIDVLRATVRRYRKNI+DLGA Sbjct: 733 VEDKHLIMQGTVGNQRNELDARKISNAQAEEAVGNARERYIDVLRATVRRYRKNIIDLGA 792 Query: 1014 LAGVVVSADLPHLDNDDTILRQAELKVSFNFDGKGEIGLNDGEASGGQQVIKSLILLVGL 1073 LAGV+VSA+LPHLDNDD +LRQAELKVSFNFDGKGEIGLNDGEASGGQQVIKSLILLVGL Sbjct: 793 LAGVIVSAELPHLDNDDAVLRQAELKVSFNFDGKGEIGLNDGEASGGQQVIKSLILLVGL 852 Query: 1074 LKDDDMPGGFVFIDEPFAHLDVRNIQLVGNFLKSTRAQYVLTTPITHNVEVFEPADITLV 1133 LKDDDMPGGFVFIDEPFAHLDVRNIQLVGNFLKSTRAQYVLTTPITHNVEVFEPADITLV Sbjct: 853 LKDDDMPGGFVFIDEPFAHLDVRNIQLVGNFLKSTRAQYVLTTPITHNVEVFEPADITLV 912 Query: 1134 TSKKPREARWAPPIGVLQRRLRLDA 1158 TSKKPREARWAPPIGVLQRRLRLDA Sbjct: 913 TSKKPREARWAPPIGVLQRRLRLDA 937 >gi|300310632|ref|YP_003774724.1| hypothetical protein Hsero_1300 [Herbaspirillum seropedicae SmR1] Length = 250 Score = 331 bits (848), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 178/195 (91%), Positives = 185/195 (94%) Query: 8 RRWLPRKHPRVRRALVDADLWQALQDRLAQVGLRLVDNIHADHISVALVRPAESAVFGEA 67 RRWLPRKHPRVRRALVDADLWQALQDRL QVGLRLVDNIHADHISVALVRPAE AVFGEA Sbjct: 18 RRWLPRKHPRVRRALVDADLWQALQDRLTQVGLRLVDNIHADHISVALVRPAEYAVFGEA 77 Query: 68 GMNANNNLDLPRDAISLLVVLWALIVLPKRERQSARAAGDDAQQQDEMFHTDKPMPTAAE 127 GMNANNNL+LPRDAISLLVVLW+LIVLPKRERQSARAAGD +QQ+EMF TDKPMP+AAE Sbjct: 78 GMNANNNLELPRDAISLLVVLWSLIVLPKRERQSARAAGDAGEQQEEMFQTDKPMPSAAE 137 Query: 128 VSPVVSYTALLADFGNQLGKKTRMDTNLRRLEAHGFVVRRGVDIAEGPLLDLLLDYDALA 187 VSPVVSY +LLADFG QLGKK RMD NLRRLEAHGF+VRRG DIAEGPLLDLLLDYDALA Sbjct: 138 VSPVVSYKSLLADFGAQLGKKMRMDGNLRRLEAHGFIVRRGDDIAEGPLLDLLLDYDALA 197 Query: 188 PRILDGALGDVLARA 202 PRILDGALGDVLARA Sbjct: 198 PRILDGALGDVLARA 212 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.133 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,211,455 Number of extensions: 125162 Number of successful extensions: 550 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 550 Number of HSP's successfully gapped: 2 Length of query: 1158 Length of database: 1,619,870 Length adjustment: 96 Effective length of query: 1062 Effective length of database: 1,165,310 Effective search space: 1237559220 Effective search space used: 1237559220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)