BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0014.p (317 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310637|ref|YP_003774729.1| LysR family transcription regul... 611 e-176 gi|300312961|ref|YP_003777053.1| transcription regulator protein... 260 1e-70 gi|300309864|ref|YP_003773956.1| LysR family transcription regul... 148 6e-37 gi|300310436|ref|YP_003774528.1| LysR family transcription regul... 137 1e-33 gi|300313102|ref|YP_003777194.1| LysR family transcription regul... 126 2e-30 >gi|300310637|ref|YP_003774729.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 326 Score = 611 bits (1575), Expect = e-176, Method: Compositional matrix adjust. Identities = 300/316 (94%), Positives = 311/316 (98%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQL+LRNSRPLRLTEA Sbjct: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLLLRNSRPLRLTEA 60 Query: 61 GRVFYEQALQILNRLEQLKNATQQIGLNQRQTLSIGFVASTLYGGLPVLVRKLRQHYPEV 120 GRVFYEQALQILNRL+QLKNATQQIGLNQRQTLSIGFVASTLYGGLP+LVRKLRQHYPEV Sbjct: 61 GRVFYEQALQILNRLDQLKNATQQIGLNQRQTLSIGFVASTLYGGLPMLVRKLRQHYPEV 120 Query: 121 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFPLAASHQ 180 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSF LA S+Q Sbjct: 121 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFALAGSNQ 180 Query: 181 RVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESGL 240 RVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESG+ Sbjct: 181 RVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESGI 240 Query: 241 CLIPASARLRNDLHYRLIDDPRATSPIILTHRINDNAWYIEAIKQLVADMYAERPAWLDI 300 CLIPASARLRNDLHYRLIDD RATSPIILTHRINDNAWYIEA+K+LVADMYAE PAWLDI Sbjct: 241 CLIPASARLRNDLHYRLIDDARATSPIILTHRINDNAWYIEAVKRLVADMYAEHPAWLDI 300 Query: 301 ETSSFPATGFPNPERR 316 +T+SFPATGFP P+R+ Sbjct: 301 DTNSFPATGFPIPQRK 316 >gi|300312961|ref|YP_003777053.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 260 bits (665), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 135/292 (46%), Positives = 196/292 (67%), Gaps = 3/292 (1%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 M++R LKYF AVA+T +F+RA+E LHIAQPPLSRQI+ LEE LGV+LI R SRP+ LT A Sbjct: 1 MELRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMA 60 Query: 61 GRVFYEQALQILNRLEQLKNATQQIGLNQRQTLSIGFVASTLYGGLPVLVRKLRQHYPEV 120 G+ FYEQ LQ+L+RLEQ++ T+ I ++ +IGFV S LYG LP ++++ R PE+ Sbjct: 61 GKFFYEQTLQVLSRLEQIEEGTRVIARGRQHWFNIGFVPSALYGLLPEMIKRFRTEMPEI 120 Query: 121 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFPLAASHQ 180 +I E+ +M+Q ALKSGRIDVGFGR+ +D + + EE LV P PL A + Sbjct: 121 EIGFSEIVTMEQVEALKSGRIDVGFGRLPISDPDIVCETIVEEPLVAVFPLGHPLLARN- 179 Query: 181 RVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESGL 240 +V+L ++ Q+ I+YP PRPS+AD +L + + + + P+ V E E+QTA+GLVAA G+ Sbjct: 180 KVTLAQLAAQRFILYPARPRPSYADQVLDIFSSRALRPSIVKEANEMQTAIGLVAAGVGV 239 Query: 241 CLIPASAR--LRNDLHYRLIDDPRATSPIILTHRINDNAWYIEAIKQLVADM 290 L+P S + R+D+ YR + + SP+I+ R ND + +E ++ A + Sbjct: 240 TLVPRSVQGLHRSDVVYRPLSNKGVHSPVIMNFRANDRSLLLERLRTTAATI 291 >gi|300309864|ref|YP_003773956.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 306 Score = 148 bits (373), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 95/267 (35%), Positives = 147/267 (55%), Gaps = 5/267 (1%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 +D+ Q++ FV A NF RA+ L++ QPPLSRQI LLE LGVQL R R +RLT Sbjct: 2 LDLAQVRCFVVAATELNFRRAAALLNMTQPPLSRQIHLLEHRLGVQLFERVGRTVRLTTE 61 Query: 61 GRVFYEQALQILNRLEQLKNATQQIGLNQRQTLSIGFVASTLYGGLPVLVRKLRQHYPEV 120 GRVF A ++L EQ ++ ++ + + +GF + Y +P L+ + R PE+ Sbjct: 62 GRVFLADASRLLQLSEQAESTVRRASQGKTGRVRVGFTGAAGYELIPELLMQARTSLPEI 121 Query: 121 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFPLAASHQ 180 D+ L EL S+ Q A + ID+GF R ++ + ++ EE LVLA+P LAA + Sbjct: 122 DVVLFELISVAQLEAFTANTIDIGFLRPVASRQPLELQLVDEEALVLAMPQGHALAA-YD 180 Query: 181 RVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESGL 240 R++ ++ GQ I++ F + I+++L D+ P + + T L LV A G+ Sbjct: 181 RIATTQLDGQPFIMHSPTHGKYFYERIMAMLGAADVKPDFTQYIDQSHTILSLVRAGLGV 240 Query: 241 CLIPASA-RLRND-LHYRLIDD--PRA 263 ++PASA R D + +R + D PRA Sbjct: 241 GILPASAQRFHYDRVEFRPLADEAPRA 267 >gi|300310436|ref|YP_003774528.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 300 Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 100/294 (34%), Positives = 153/294 (52%), Gaps = 11/294 (3%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 +++RQL+YF AVA +F RA+ +LH+ QPPLS+ I LEE LG L R R + LT A Sbjct: 7 LELRQLRYFAAVAEEMHFGRAAARLHMTQPPLSQTIAALEELLGTPLFQRTKRSVALTAA 66 Query: 61 GRVFYEQALQILNRLEQLKNATQQIGLNQRQTLSIGFVASTLYGGLPVLVRKLRQHYPEV 120 G +A ++L + L + ++ LS+ F++S Y LP L+++ R HYP+V Sbjct: 67 GAALLPEAQRLLQQAAALPDLVRRAASGASGLLSLSFISSADYSILPPLLQRFRAHYPQV 126 Query: 121 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLR---EEKLVLAIPPSFPLAA 177 I+L E T+ Q L G+ID G + A + +R E L+ A+P A Sbjct: 127 QIELREATTDVQLEDLLQGKIDAGLLLPPLPEKAAALLEVRPVLSEPLIAALPE----GA 182 Query: 178 SHQR--VSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVA 235 +R VSLK + LI++P+ P+F D ILS D + P E ++QT +GLV+ Sbjct: 183 VRKRGPVSLKSLRELPLIIFPRRIAPAFHDTILSCFRDAGVTPHIGQEAIQMQTIVGLVS 242 Query: 236 AESGLCLIPASAR--LRNDLHYRLIDDPRATSPIILTHRINDNAWYIEAIKQLV 287 A G+ L+P S R + YR + DP L R + + + A+ +L+ Sbjct: 243 AGMGMALVPQSVSNLKRPGVDYRRLSDPAPAIQTSLAWRRDSPSSVLRALLELL 296 >gi|300313102|ref|YP_003777194.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 126 bits (317), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 118/246 (47%), Gaps = 1/246 (0%) Query: 1 MDIRQLKYFVAVANTRNFTRASEQLHIAQPPLSRQIQLLEEELGVQLILRNSRPLRLTEA 60 +++R L YF VA T +F RA+E LHI+QPPL+RQI LE+ELG QL R+ R ++LT A Sbjct: 2 IELRHLTYFRTVAETLHFGRAAELLHISQPPLTRQIAALEKELGAQLFDRSKRAIQLTAA 61 Query: 61 GRVFYEQALQILNRLEQLKNATQQIGLNQRQTLSIGFVASTLYGGLPVLVRKLRQHYPEV 120 G+ FY +I LE+ K + L +GF+ ST Y LP + R YPEV Sbjct: 62 GKYFYRDTTEIFKALERAKRNVSSSSTGKSGALKVGFMMSTAYNILPSVTRHYSAAYPEV 121 Query: 121 DIQLLELTSMQQFAALKSGRIDVGFGRIRSNDATVARIVLREEKLVLAIPPSFPLAASHQ 180 D++L E ++ +IDVG + + + E L+ +P LA Q Sbjct: 122 DMRLTEYVPNLLATDIEDEKIDVGIMYRPEDCRRLDSHTIYAEPLLAVLPRDHRLAG-RQ 180 Query: 181 RVSLKEVHGQKLIVYPKEPRPSFADHILSLLNDQDIHPAEVHEVREIQTALGLVAAESGL 240 +S E+ I P+ P D I P V E QT + LV G+ Sbjct: 181 SISAAELAEDAFISIPRMIAPVVYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEGLGV 240 Query: 241 CLIPAS 246 L+P S Sbjct: 241 ALVPTS 246 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 959,701 Number of extensions: 38815 Number of successful extensions: 234 Number of sequences better than 1.0e-08: 66 Number of HSP's gapped: 206 Number of HSP's successfully gapped: 66 Length of query: 317 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 232 Effective length of database: 1,217,395 Effective search space: 282435640 Effective search space used: 282435640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)