BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0011.p (363 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310640|ref|YP_003774732.1| achlorobenzoate 1,2-dioxygenase... 583 e-168 gi|300310673|ref|YP_003774765.1| phenylpropionate dioxygenase la... 154 8e-39 gi|300312958|ref|YP_003777050.1| anthranilate dioxygenase large ... 131 9e-32 gi|300313128|ref|YP_003777220.1| dioxygenase subunit alpha oxido... 66 4e-12 >gi|300310640|ref|YP_003774732.1| achlorobenzoate 1,2-dioxygenase subunit alpha [Herbaspirillum seropedicae SmR1] Length = 462 Score = 583 bits (1504), Expect = e-168, Method: Compositional matrix adjust. Identities = 272/293 (92%), Positives = 286/293 (97%) Query: 2 TTLAADKYEEVERLLDTALDEDATNGIFRCRRDIFTNADLFELEMKHLFESNWVYLAHES 61 TT AAD+Y+E++ LL +AL ED NG+FRCRRDIFTN DLFELEMKHLFESNWVYLAHES Sbjct: 3 TTAAADRYDELDTLLQSALQEDKDNGVFRCRRDIFTNPDLFELEMKHLFESNWVYLAHES 62 Query: 62 QVPEINDYYSTWIGRQPVVVTRDKNGELHAVINACAHKGAMLCRRKHGNKSSFTCPFHGW 121 Q+PEINDYY+TWIGRQPVV+TRDK+G+L+AVINAC+HKGAMLCRRKHGNKSSFTCPFHGW Sbjct: 63 QIPEINDYYTTWIGRQPVVITRDKSGQLNAVINACSHKGAMLCRRKHGNKSSFTCPFHGW 122 Query: 122 TFSNSGKLLKVKDEKTTEYPVSFNKNGSHDLTRVARFQNYRGFLFGSLSEDVLPLEEYLG 181 TFSNSGKLLKVKDEKTTEYPVSFNKNGSHDLTRVARFQ+YRGFLFGSLSEDVLPLEEYLG Sbjct: 123 TFSNSGKLLKVKDEKTTEYPVSFNKNGSHDLTRVARFQSYRGFLFGSLSEDVLPLEEYLG 182 Query: 182 ETRVIIDQIVDQAPNGLEVLRGNSSYLYDGNWKMQMENGCDGYHVSSVHWNYAATMSRRK 241 ETRVIIDQIVDQAPNGLEVLRGNSSYLYDGNWKMQMENGCDGYHVSSVHWNYAATMSRRK Sbjct: 183 ETRVIIDQIVDQAPNGLEVLRGNSSYLYDGNWKMQMENGCDGYHVSSVHWNYAATMSRRK 242 Query: 242 EGGTKATDANNWSKAVAGVYGFENGHILLWTNTLNPEVRPIWNQREELAARVG 294 EGGTKATDANNWSKAVAGVYGFENGHILLWTNTLNPEVRPIWNQREELAARVG Sbjct: 243 EGGTKATDANNWSKAVAGVYGFENGHILLWTNTLNPEVRPIWNQREELAARVG 295 >gi|300310673|ref|YP_003774765.1| phenylpropionate dioxygenase large terminal subunit [Herbaspirillum seropedicae SmR1] Length = 428 Score = 154 bits (390), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 132/244 (54%), Gaps = 25/244 (10%) Query: 35 IFTNADLFELEMKHLFESNWVYLAHESQVPEINDYYSTWIGRQPVVVTRDKNGELHAVIN 94 ++T+ LFE EM +F W+++AHES++ D+ + IGRQPV+V RDK G+++ + N Sbjct: 29 LYTDPALFEAEMDKIFYKTWIWVAHESEIKNPGDFKTAQIGRQPVIVVRDKTGKINVLEN 88 Query: 95 ACAHKGAMLCRRKHGNKSSFTCPFHGWTFSNSGKLLKVKDEKTTEYPVSFNKNGSHDLTR 154 C H+GA +C + GN + FTCP+H W++ GKL + YP G D+ Sbjct: 89 RCRHRGATVCEKHKGNATGFTCPYHSWSYGLDGKL------RGLPYP-----EGYEDVIE 137 Query: 155 VA-------RFQNYRGFLFGSLSEDVLPLEEYLGETRVIIDQIVDQAPNGLEVLRGNSSY 207 A R ++Y G +F S ++++ PL ++LG + ID + Q ++G + Sbjct: 138 KADLPLQSLRCESYHGMIFASFNQEIEPLSDFLGHAKKWIDLFMKQGAGFPIKVQGEHKF 197 Query: 208 LYDGNWKMQMENGCDGYHVSSVHWNYAATMSRR-KEGGTKATDANNWSKAVAGVYGFENG 266 + GNWK+Q+EN DGYH VH + +++ E + TD + ++++ NG Sbjct: 198 SFKGNWKIQLENTTDGYHFPVVHKTFLSSVDEETSEMLSFMTDDQSITRSLG------NG 251 Query: 267 HILL 270 H ++ Sbjct: 252 HSVM 255 >gi|300312958|ref|YP_003777050.1| anthranilate dioxygenase large subunit [Herbaspirillum seropedicae SmR1] Length = 426 Score = 131 bits (329), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 74/201 (36%), Positives = 114/201 (56%), Gaps = 10/201 (4%) Query: 35 IFTNADLFELEMKHLFES-NWVYLAHESQVPEINDYYSTWIGRQPVVVTRDKNGELHAVI 93 +F++ ++++LE + ++ W +LA E+++P DY ST++G PVVVTR ++G L A + Sbjct: 30 VFSSREVYDLEQERIYRGETWSFLALEAEIPNNGDYKSTFVGDTPVVVTRTEDGALAAWV 89 Query: 94 NACAHKGAMLCRRKHGNKSSFTCPFHGWTFSNSGKLLKVKDEKTTEYPVSFNKN---GSH 150 N C+H+GAM+CR GN SS +C +H W+F + G LL V + + K+ H Sbjct: 90 NKCSHRGAMVCRTPRGNASSHSCAYHQWSFDSRGNLLGVPFRRGQKGATGMAKDFDPKCH 149 Query: 151 DLTRVARFQNYRGFLFGSLSEDVLPLEEYLG-ETRVIIDQIVDQAPNGLEVLRGNSSYLY 209 L R R +Y+G +F + SE V L +Y+G E R ID+I + L R S Sbjct: 150 GL-RQLRVDSYKGLVFATFSETVEALPDYIGAEMRPWIDRIFHKPIVYLGCTRQYSK--- 205 Query: 210 DGNWKMQMENGCDGYHVSSVH 230 NWK+ +EN D YH S +H Sbjct: 206 -SNWKLYLENVKDPYHASLLH 225 >gi|300313128|ref|YP_003777220.1| dioxygenase subunit alpha oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 374 Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 36/204 (17%) Query: 35 IFTNADLFELEMKHLFESNWVYLAHESQVPEINDYYSTWIGRQPVVVTRDKNGELHAVIN 94 ++ + L++ E+K LF+ Y+ HE VPE DY + + ++ R+ G + V N Sbjct: 21 VYFDEPLYQRELKQLFQQGPRYVGHELMVPEAGDYSTLPWENEGRMLVRNAQG-IELVSN 79 Query: 95 ACAHKGAMLCRRKHGNKSSFTCPFHGWTFSNSGKLLKVKDEKTTEYPVSFNKNGSHDLTR 154 C H+ A + + G+ S+ CP H WT+ G+L+ F + +L++ Sbjct: 80 VCRHRQAKMLDGR-GHASNIVCPLHRWTYDLKGELIGAP---------HFGQTPCMNLSK 129 Query: 155 VARFQNYRGFLFGSLSEDVLPLEEYLGETRVIIDQIVDQAPNGLEVLRGNSSYLYDG--- 211 Q++ G LF + D+ + LG TR + S YLYD Sbjct: 130 TP-LQSWNGLLFEANGVDIADKLKNLGVTRDL----------------DFSGYLYDHTEV 172 Query: 212 -----NWKMQMENGCDGYHVSSVH 230 NWK +E + YHV H Sbjct: 173 HECDYNWKTFIEVYLEDYHVEPFH 196 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,196,403 Number of extensions: 51576 Number of successful extensions: 106 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 102 Number of HSP's successfully gapped: 4 Length of query: 363 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 277 Effective length of database: 1,212,660 Effective search space: 335906820 Effective search space used: 335906820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)