BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0008.p (341 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310642|ref|YP_003774734.1| electron transfer component of ... 583 e-168 gi|300312623|ref|YP_003776715.1| chaperone activity ATPase [Herb... 154 9e-39 gi|300312956|ref|YP_003777048.1| CDP-6-deoxy-L-threo-D-glycero-4... 97 2e-21 gi|300311823|ref|YP_003775915.1| nitric oxide dioxygenase [Herba... 74 2e-14 gi|300313415|ref|YP_003777507.1| phenylacetic acid degradation N... 65 1e-11 >gi|300310642|ref|YP_003774734.1| electron transfer component of chlorobenzoate 1,2-dioxygenase [Herbaspirillum seropedicae SmR1] Length = 351 Score = 583 bits (1503), Expect = e-168, Method: Compositional matrix adjust. Identities = 280/331 (84%), Positives = 297/331 (89%) Query: 1 MSSYRIALNFEDGVTRIIQCGPKEKVLDAAFRQRINLPMDCSDGVCGTCKCRAESGQYDL 60 MSSYRIALNFEDGVTRII CG KEKVLDAAFR RINLPMDCSDGVCGTCKCRAESG YDL Sbjct: 1 MSSYRIALNFEDGVTRIIDCGAKEKVLDAAFRNRINLPMDCSDGVCGTCKCRAESGLYDL 60 Query: 61 GDDYIDDALSSDEAEQGLVLTCQMIPQSDCVVAVPVASTACKTGSAKFGGKVAEVTAFGE 120 GDDYIDDALSSDEA G+VLTCQM+PQSDCV+AVPVASTACKTG+A F GKVA ++ G Sbjct: 61 GDDYIDDALSSDEAGAGMVLTCQMVPQSDCVIAVPVASTACKTGTASFTGKVAGLSDLGG 120 Query: 121 AAFELVLEVAADAPAFLPGQYVNIAVPGSGQHRSYSFSSPSGATRMSFLIKNVPGGLMSG 180 AAFELVLE A+APAFLPGQYVNI VPGSGQHRSYSFSSPSGA+RMSFLIKNVPGGLMS Sbjct: 121 AAFELVLEAPANAPAFLPGQYVNIGVPGSGQHRSYSFSSPSGASRMSFLIKNVPGGLMSN 180 Query: 181 WLGKAATGDALEMTGPLGSFYLRPVNKPVLMLAGGTGLAPFLAMLEEMAQQGVQHPVHLI 240 WL A+ G LE+TGPLGSFYLRPV +PVLMLAGGTGLAPFL+MLEE+AQQG+ PVHLI Sbjct: 181 WLAGASEGATLELTGPLGSFYLRPVKRPVLMLAGGTGLAPFLSMLEELAQQGLDQPVHLI 240 Query: 241 YGVTRDQDLVLVERLDDLAQRLSGFSFTTCVADAATTHPRQGYVTQHMPAEVLHDGAVDV 300 YGVTRDQDLVLVERL LA RL GFSFTTCVAD ATTH RQGYVTQHMPA VLHDG VDV Sbjct: 241 YGVTRDQDLVLVERLQALADRLPGFSFTTCVADPATTHARQGYVTQHMPAAVLHDGNVDV 300 Query: 301 YLCGPPPMVEAVQKHFQSQGIAPASFHYEKF 331 YLCGPPPMVEAVQKHFQ+ G+ PASF+YEKF Sbjct: 301 YLCGPPPMVEAVQKHFQATGMQPASFYYEKF 331 >gi|300312623|ref|YP_003776715.1| chaperone activity ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 154 bits (389), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 107/335 (31%), Positives = 167/335 (49%), Gaps = 14/335 (4%) Query: 16 RIIQCGPKEKVLDAAFRQRINLPMDCSDGVCGTCKCRAESGQYDLGDDYIDDALSSDEAE 75 R C E +L AA R + LP C +G C +CK + SGQ + G + + ALS+ E + Sbjct: 12 RQFTCDADESILTAAIRAGVGLPYGCKNGACSSCKGKLVSGQVEHGP-HQERALSAHEQQ 70 Query: 76 QGLVLTCQMIPQSDCVVAVPVASTACKTGSAKFGGKVAEVTAFGEAAFELVLEV-AADAP 134 G+ L C PQSD + + A K +VA++ + L L++ A D Sbjct: 71 LGMALFCVAKPQSDVTIEAREVAGAGDIPVRKLPVRVAKLDKVADDVIVLSLQLPANDRL 130 Query: 135 AFLPGQYVNIAVPGSGQHRSYSFSS-PSGATRMSFLIKNVPGGLMSGWL-GKAATGDALE 192 + GQYV + G+ RSYS ++ P MS I+++PGGL + + D L Sbjct: 131 QYKAGQYVEFLL-RDGKRRSYSMATAPHKDEHMSLHIRHLPGGLFTDQVFTTLKERDILR 189 Query: 193 MTGPLGSFYLRP-VNKPVLMLAGGTGLAPFLAMLEEMAQQGVQHPVHLIYGVTRDQDLVL 251 + GPLG+F+LR +KP+++LA GTG AP A++E++ G + PV L +G R QDL + Sbjct: 190 IEGPLGTFFLREDSDKPIILLASGTGFAPIKAIVEQLEHAGSKRPVTLYWGGRRPQDLYM 249 Query: 252 VERLDDLAQRLSGFSFTTCVADAATTHP---RQGYVTQHMPAEVLHDGAVDVYLCGPPPM 308 Q L F + V++A R G+V + + + VY CG P + Sbjct: 250 DALCQQWEQTLPNFKYVPVVSNAQAEDNWSGRTGFVHRAVMEDFPDLSGHQVYACGAPIV 309 Query: 309 VEAVQKHFQSQ-GIAPASFHYEKFVT----SQPVA 338 VE+ Q+ F +Q G+ F+ + F + ++PVA Sbjct: 310 VESAQRDFSAQCGLPQDEFYADSFTSEADLAKPVA 344 >gi|300312956|ref|YP_003777048.1| CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase [Herbaspirillum seropedicae SmR1] Length = 360 Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 110/216 (50%), Gaps = 9/216 (4%) Query: 126 VLEVAADAP-AFLPGQYVNIAVPGSGQHRSYSFSS--PSGATRMSFLIKNVPGGLMSGWL 182 +L + AP ++ GQY+++ + GQ RSYS ++ G+ + ++++PGGL + L Sbjct: 140 ILRLRCAAPLSYRAGQYIDLLLE-DGQRRSYSMATYAKDGSDLLELHVRHLPGGLFTDRL 198 Query: 183 GKAAT-GDALEMTGPLGSFYLRPVNKPVLMLAGGTGLAPFLAMLEEMAQQGVQHPVHLIY 241 G + GP GSF++R +P+++LA GTG AP A++EE G + L + Sbjct: 199 FNGMQPGQQFSLEGPAGSFFMREGTQPLILLASGTGFAPVKALVEEAIASGSTRAMRLYW 258 Query: 242 GVTRDQDLVLVERLDDLAQRLSGFSFTTCVADAATT---HPRQGYVTQHMPAEVLHDGAV 298 G R DL L D A L F + +++A T R G V + + +V Sbjct: 259 GGRRAADLYLDALCRDWAASLPWFDYVPVLSEADATSGWSGRTGLVHRAVMQDVPAMQQY 318 Query: 299 DVYLCGPPPMVEAVQKHFQSQ-GIAPASFHYEKFVT 333 VY CG P +VE+ ++ F + G++ +F + FV+ Sbjct: 319 QVYACGAPVVVESARRDFTAACGLSETAFFADAFVS 354 >gi|300311823|ref|YP_003775915.1| nitric oxide dioxygenase [Herbaspirillum seropedicae SmR1] Length = 397 Score = 73.6 bits (179), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 75/307 (24%), Positives = 120/307 (39%), Gaps = 33/307 (10%) Query: 45 VCGTCKCRA--ESGQYDLGDDYIDDALSSDEAEQGLVLTCQMIPQSDCVVAVPVASTACK 102 + G C RA E ++ D + DA ++ + +L Q + P Sbjct: 97 MVGDCLLRAIREVLGAEIATDAVIDAWAAAYGQLADILIGAERQQYEAKAQAP----GGW 152 Query: 103 TGSAKF--GGKVAEVTAFGEAAFELVLEVAADAPAFLPGQYV--NIAVPGSGQHRSYSFS 158 +G+ F KVAE +F V + + F PGQY+ + V G Q R YS S Sbjct: 153 SGARNFIVSRKVAESEEI--TSFHFVPQDGGELLDFAPGQYIGLRMVVDGEEQRRQYSLS 210 Query: 159 S----PSGATRMSFLIKNVPGGLMSGWL-GKAATGDALEMTGPLGSFYLRPVNKPVLMLA 213 + + +K PGG +S L + G +E+ P G F L +KP+ +++ Sbjct: 211 ALLRQAGQPPQYRISVKREPGGKVSRQLHDQIHVGSVVELFPPAGEFTLMASDKPLALIS 270 Query: 214 GGTGLAPFLAMLEEMAQQGVQHPVHLIYGVTRDQDLVLVERLDDLAQRLSGFSFTTCVAD 273 GG G+ P ++ML G P+H I+ +L++LA R C Sbjct: 271 GGVGITPMMSMLAAALPSG--RPIHFIHAARHGGVHAFRRQLEELAARHPQLQLRFCY-- 326 Query: 274 AATTHPRQGYVTQHMPAEVLH---------DGAVDVYLCGPPPMVEAVQKHFQSQGIAPA 324 PRQG H + + +D Y GP ++A+++ G+ A Sbjct: 327 ---EQPRQGDAAPHATGLIERSLLQQWLPGNPDLDAYFVGPKSFMKAIKRQLAELGVPAA 383 Query: 325 SFHYEKF 331 YE F Sbjct: 384 QSRYEFF 390 >gi|300313415|ref|YP_003777507.1| phenylacetic acid degradation NADH oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 356 Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 56/232 (24%), Positives = 89/232 (38%), Gaps = 41/232 (17%) Query: 132 DAPAFLPGQYVNI--AVPGSGQHRSYSFSSPSGATRMSFLIKNVPGGLMSGWLGKAAT-G 188 D ++ GQ++ + + G RSYS S ++ IK PGGL S W ++ G Sbjct: 32 DTFSYQQGQHLTLRSEINGEDLRRSYSICSAVQERQLRVAIKRAPGGLFSNWANESFVPG 91 Query: 189 DALEMTGPLGSFYLRPV----NKPVLMLAGGTGLAPFLAMLEEMAQQGVQHPVHLIYGVT 244 +++ P+G F + P+ K L A G+G+ P +++++ L+Y Sbjct: 92 QRIDVMPPMGHFNV-PLEAGNRKHYLAFAAGSGITPMMSIIKTTLLSEPHSHFTLVYANR 150 Query: 245 RDQDLVLVERLDDLAQRLSGFSFTTCVADAATTHPRQGYVTQHMPAEV-LHDGAVD---- 299 ++ E L DL DA YV +V L +G +D Sbjct: 151 ASSSVIFKEELTDLK-------------DAYLERFNVVYVMSREQQDVELFNGRIDRAKC 197 Query: 300 ---------------VYLCGPPPMVEAVQKHFQSQGIAPASFHYEKFVTSQP 336 +LCGP MV+AV Q+ G+ E F S P Sbjct: 198 DAFFASWIDLKDVDAAFLCGPEEMVQAVAASLQAHGLPKTQIKTELFAASTP 249 Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 3/67 (4%) Query: 23 KEKVLDAAFRQRINLPMDCSDGVCGTCKCRAESGQYDLGDDYIDDALSSDEAEQGLVLTC 82 KE VL+A + I+L C GVC TC+C+ G+ D+ +Y AL E +G VL+C Sbjct: 283 KESVLEAGLKHGIDLRYSCKGGVCATCRCKVVEGKVDMDANY---ALEDYEIARGFVLSC 339 Query: 83 QMIPQSD 89 Q P SD Sbjct: 340 QSFPVSD 346 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,088,467 Number of extensions: 45691 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 8 Length of query: 341 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 255 Effective length of database: 1,212,660 Effective search space: 309228300 Effective search space used: 309228300 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)