BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0003.p
         (423 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310647|ref|YP_003774739.1| hypothetical protein Hsero_1315...   631   0.0  

>gi|300310647|ref|YP_003774739.1| hypothetical protein Hsero_1315
           [Herbaspirillum seropedicae SmR1]
          Length = 422

 Score =  631 bits (1627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/423 (81%), Positives = 381/423 (90%), Gaps = 1/423 (0%)

Query: 1   MTPQHHSFDPLASEILAVVPGRAHDLARLRVLAQVHAAPTVTVVGKYNHGKSRLLNELMG 60
           M PQ   FDPLASE+LAV P RAHDLARLRVLAQ HAAPTVTVVGKYNHGKSRLLNEL+G
Sbjct: 1   MNPQDF-FDPLASEVLAVAPTRAHDLARLRVLAQRHAAPTVTVVGKYNHGKSRLLNELVG 59

Query: 61  RDVFAVADRRETVTLSEHHHAELRWLDAPGLDADVALQDDSHAQEATWLQADVRLFVHAA 120
           RDVFAVADRR+TVTLSEHHHAELRWLDAPGLDADVA QDD HAQ+A WL AD+RLFVHAA
Sbjct: 60  RDVFAVADRRQTVTLSEHHHAELRWLDAPGLDADVAEQDDGHAQQAIWLHADIRLFVHAA 119

Query: 121 KEGELDAAERHLLQALREDQQRTRRQTLFVLTQVDQMSDDEQLAKVSAAIVAQAPGLTLH 180
           KEGELDAAER LLQ LREDQ RTRRQTLFVLTQVDQMSD+EQLAKVSAAI AQA GL LH
Sbjct: 120 KEGELDAAERKLLQTLREDQLRTRRQTLFVLTQVDQMSDEEQLAKVSAAIEAQAHGLALH 179

Query: 181 PVSSTRHRSGVEGGKSLLLQRSGIPALQALLREVVEQVPGARRHERNLLFTEIGQQVRQQ 240
           PVS+TRHR+GVEGGK LLL +SGIPALQALLREVV+QVP AR+HE+ +LF +IG+Q++QQ
Sbjct: 180 PVSATRHRNGVEGGKQLLLNKSGIPALQALLREVVQQVPAARQHEQAVLFADIGEQLQQQ 239

Query: 241 QAALESGLKTLRQRQQQQRQDFEQGLQAVLEKVHQDLLPIVEFQGDDPALVPDTAADEFK 300
           QAA ++  + L+QRQQQQRQ FEQGLQ+VLE +HQDLLPIVE QG+DPAL PDTAADEF+
Sbjct: 240 QAAAQAQWQALQQRQQQQRQQFEQGLQSVLESIHQDLLPIVELQGEDPALTPDTAADEFR 299

Query: 301 LTAGKRERARIHVAYSRACIAIRAHLIQHGVEGLPASQQTSVASLDTVMVAVLGISIKYR 360
           LTAGKRERARIHVAYSRACIAIRAHLIQHGVEGLPA Q+TSVASLDTVMVAV+GIS+KYR
Sbjct: 300 LTAGKRERARIHVAYSRACIAIRAHLIQHGVEGLPADQRTSVASLDTVMVAVMGISVKYR 359

Query: 361 ADLRRRFCEPAGQAHLKEAFLHYYELSEDRQALQQQIAIGEAELHAHQRAQQALARLREG 420
           ADLRRRFCEPAGQA L ++FLHYYELSED+QALQQ +A  ++E  A+ RA +AL RLR+G
Sbjct: 360 ADLRRRFCEPAGQAQLMQSFLHYYELSEDQQALQQALAQAQSEQQANTRALEALQRLRQG 419

Query: 421 AGA 423
           A A
Sbjct: 420 ASA 422


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,236,385
Number of extensions: 49681
Number of successful extensions: 252
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 335
Effective length of database: 1,203,190
Effective search space: 403068650
Effective search space used: 403068650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)