BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0037.0002.p
         (517 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310648|ref|YP_003774740.1| hypothetical protein Hsero_1316...   679   0.0  

>gi|300310648|ref|YP_003774740.1| hypothetical protein Hsero_1316
           [Herbaspirillum seropedicae SmR1]
          Length = 512

 Score =  679 bits (1751), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/508 (75%), Positives = 431/508 (84%), Gaps = 1/508 (0%)

Query: 1   MSREEQRFIDSIGRTGQGEADLQPVLSALRDWLAALAQAFEAAPLPASGLQSASPMARRM 60
           M+R+EQ+FID+IGRTGQGEADLQPVL+ALR WL+AL QA +   + A GLQ  S +ARR+
Sbjct: 1   MNRQEQQFIDAIGRTGQGEADLQPVLAALRGWLSALDQALQDGRIDAVGLQPGSALARRI 60

Query: 61  AALHEERIHQARCREEQWIALAPARALAQRFEGKLMLLVFGKFNAGKSSLCNFLAQRFRE 120
           A LH++   QA+ R++QW+ALAPARALAQRFEGKLMLLVFGKFNAGKSSLCNFLAQRFR+
Sbjct: 61  AGLHDDLARQAQRRQQQWMALAPARALAQRFEGKLMLLVFGKFNAGKSSLCNFLAQRFRQ 120

Query: 121 RQQAVQYFHLQDGALVESEDPFHEGATETTARLQGVCLGDGLVLLDTPGLHSATGENAAL 180
           R QAVQYFHLQDG L+ES   FHEGATETTARLQGVCLGDGLVLLDTPGLHSAT +NAAL
Sbjct: 121 RGQAVQYFHLQDGQLIESASAFHEGATETTARLQGVCLGDGLVLLDTPGLHSATDDNAAL 180

Query: 181 TQRFLDSADAVLWLTSSTSPGQVQELDELARELRRGKPLLPVLTRSDVIDEDEVDGRIVK 240
           TQRFLDSADAVLWLTSSTSPGQVQELDELARELRRGKPLLPVLTRSDVIDEDE+DG+IVK
Sbjct: 181 TQRFLDSADAVLWLTSSTSPGQVQELDELARELRRGKPLLPVLTRSDVIDEDELDGQIVK 240

Query: 241 CLRNKSDANRADQEADVRARAADKLQSLGVALHQLKAPVSVSAYVARTAGADAEAMRGAG 300
            LRNKS ANRADQEADV ARA DKLQ+LGVAL QLK PVS+SA+VART GADA AM GAG
Sbjct: 241 RLRNKSPANRADQEADVHARARDKLQALGVALSQLKPPVSLSAHVARTEGADAAAMEGAG 300

Query: 301 FERLYAALSDLLAPALAYRDRKPAEVLLHHLQEAVLAPLQGQTLPALRGLQQLVQSELQA 360
           F+R YAALS LLAPALAYRDRKPAEVLLHHLQE VLAPL GQTLPAL+ LQQL++ E   
Sbjct: 301 FDRFYAALSALLAPALAYRDRKPAEVLLHHLQEDVLAPLLGQTLPALQALQQLLEQEQAT 360

Query: 361 LPASRARIVQLAWREVMPGLPALLEQHAGTGDVDTVLASLQASLMHAFERHARAVLDSHV 420
           LPA  ARIVQLAWRE+MPGLPALLEQHA   D+  VL ++Q  +MHAFERHARAVLDSHV
Sbjct: 361 LPAQCARIVQLAWREIMPGLPALLEQHAAADDLAAVLDTVQPLMMHAFERHARAVLDSHV 420

Query: 421 LSAPAPVALVLPAGSGYER-IADDLPPSYEKLYEALSQSVLAALEQLADEVAGHCTARLA 479
           L+APA   +VLPA +GYER  ADDLPPSYEKLY+AL Q++  +LE LA+     C ARL 
Sbjct: 421 LAAPAAQGIVLPADAGYERAFADDLPPSYEKLYDALGQAIQLSLEALAETTGQVCAARLE 480

Query: 480 ALSDAVSVQRALVDEHARRLQQLESGLR 507
           ALS AV  ++ ++  +  +L ++E GLR
Sbjct: 481 ALSAAVHRKQQIIHRYTGQLGEIEQGLR 508


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,432,734
Number of extensions: 54261
Number of successful extensions: 299
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 428
Effective length of database: 1,198,455
Effective search space: 512938740
Effective search space used: 512938740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)