BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0037.0001.p (314 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313134|ref|YP_003777226.1| twitching motility transmembran... 82 7e-17 gi|300312035|ref|YP_003776127.1| methyl-accepting chemotaxis tra... 80 2e-16 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 79 4e-16 gi|300312840|ref|YP_003776932.1| methyl-accepting chemotaxis I p... 79 5e-16 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 77 2e-15 >gi|300313134|ref|YP_003777226.1| twitching motility transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 753 Score = 81.6 bits (200), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 61/189 (32%), Positives = 103/189 (54%), Gaps = 6/189 (3%) Query: 115 ADMARAGVVAKQSGGSVDRAVAAVEQTVRSVAAISSYIETSLSTYRSLAGQAASIGGIVD 174 AD+AR V+A + G AVE ++++ I I+ + L + IG I + Sbjct: 532 ADVARHAVLAAERGER------AVENAIKAMNGIREQIQETSGRITRLGESSQMIGEITE 585 Query: 175 TIHEIASQTNLLALNAAIEAARAGESGRGFAVVAAEVKRLAGRVGQSSKEIGKIASSLSQ 234 I +I +TN+LALNAAI+AA AGE+GRGF+VVA EV+ LA R +++EIG + + Sbjct: 586 LISDITERTNVLALNAAIQAASAGEAGRGFSVVAEEVQHLAERSSAATREIGALVRMIQA 645 Query: 235 SSGAALREAERAATLATQGRGSAGLAHEAMSEVIDGARKRVAIVGGINEALARQSDVAAA 294 + + +++ T T+G + A A++++ + K ++ G+ + Q+ A Sbjct: 646 DTRDVVVAMDKSTTGVTEGAVLSDAAGSALADIRSVSEKLAELIQGMAGSTREQAVSANG 705 Query: 295 LALQTQGLL 303 +A Q QG+L Sbjct: 706 VAQQIQGIL 714 >gi|300312035|ref|YP_003776127.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 548 Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/150 (38%), Positives = 79/150 (52%), Gaps = 18/150 (12%) Query: 156 LSTYRSLAGQAASIGGIVDTIHEIASQTNLLALNAAIEAARAGESGRGFAVVAAEVKRLA 215 + T S+ + I I+ I IA QTN+LALNAA+EAARAGE GRGFAVVA+EV+ LA Sbjct: 343 VDTMNSINESSRKIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLA 402 Query: 216 GRVGQSSKEIGKIASSLSQSSGAALREAERAATLATQGRGSAGLAHEAMSEVIDGARKRV 275 R ++KEI ++ G+ + E+A T MS+++D ++ Sbjct: 403 QRSAAAAKEIKELIDDSVSKVGSGSKLVEQAGT--------------TMSDIVDSVQRVT 448 Query: 276 AIVGGINEALARQ----SDVAAALALQTQG 301 IVG I A Q S V A+A QG Sbjct: 449 VIVGDIANASEEQSAGISQVNQAIAQMDQG 478 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 79.0 bits (193), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/140 (37%), Positives = 80/140 (57%) Query: 152 IETSLSTYRSLAGQAASIGGIVDTIHEIASQTNLLALNAAIEAARAGESGRGFAVVAAEV 211 +E + T + ++ A I I+ T+ IA QTN+LALNAA+EAARAGE GRGFAVVA EV Sbjct: 344 VERVVGTMKDISQSAYKITEIIATVEGIAFQTNILALNAAVEAARAGEQGRGFAVVATEV 403 Query: 212 KRLAGRVGQSSKEIGKIASSLSQSSGAALREAERAATLATQGRGSAGLAHEAMSEVIDGA 271 + LA R S+KEI + S Q A + + A + S ++ MSE+ + Sbjct: 404 RSLAQRSASSAKEIRGLIESSVQHVEAGQKLVDEAGLTMDEVVRSIQQVNDLMSEITAAS 463 Query: 272 RKRVAIVGGINEALARQSDV 291 ++ + + IN A+++ +V Sbjct: 464 NEQSSGISQINIAISQMDEV 483 >gi|300312840|ref|YP_003776932.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 646 Score = 79.0 bits (193), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 53/132 (40%), Positives = 73/132 (55%), Gaps = 14/132 (10%) Query: 158 TYRSLAGQAASIGGIVDTIHEIASQTNLLALNAAIEAARAGESGRGFAVVAAEVKRLAGR 217 T + L + I I+ I IA QTN+LALNAA+EAARAGE GRGFAVVA EV+ LA R Sbjct: 472 TMQGLHASSDRISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQR 531 Query: 218 VGQSSKEIGKIASSLSQSSGAALREAERAATLATQGRGSAGLAHEAMSEVIDGARKRVAI 277 +++EI ++ ++ + G QG A A + M E++ R+ I Sbjct: 532 SATAAREIKELITASVEQVG--------------QGTQLADQAGKTMEEIVTSIRRVSDI 577 Query: 278 VGGINEALARQS 289 + GIN A A Q+ Sbjct: 578 MVGINAATAEQN 589 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/207 (31%), Positives = 107/207 (51%), Gaps = 28/207 (13%) Query: 99 LHGLVQDLSSLLDRTIADMARAGVVAKQSGGSV----DRAVAAVEQTVRSVAAISSYIET 154 L G + + L+ T + M + KQ+ + D A+AA + V+ + +S ++T Sbjct: 294 LSGRTEQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVQT 353 Query: 155 SLSTYRSLAGQAASIGGIVDTIHEIASQTNLLALNAAIEAARAGESGRGFAVVAAEVKRL 214 +S+ + + IV I IA QTN+LALNAA+EAARAGE GRGFAVVA+EV+ L Sbjct: 354 ----MQSINASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL 409 Query: 215 AGRVGQSSKEI--------GKI--ASSLSQSSGAALREAERAATLATQGRGSAGLAHEAM 264 A R ++KEI GK+ S L + +G+ + + + T + M Sbjct: 410 AQRSASAAKEIKVLIGDSVGKVENGSKLVEQAGSTMHDIVTSIRRVT----------DVM 459 Query: 265 SEVIDGARKRVAIVGGINEALARQSDV 291 +E+ R++ + + +NEA+ + D+ Sbjct: 460 TEINHANREQSSGIEQVNEAIIQIDDM 486 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.314 0.125 0.330 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 622,600 Number of extensions: 18923 Number of successful extensions: 288 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 230 Number of HSP's successfully gapped: 69 Length of query: 314 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 229 Effective length of database: 1,217,395 Effective search space: 278783455 Effective search space used: 278783455 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)