BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0554.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311308|ref|YP_003775400.1| exopolysaccharide biosynthesis ...   224   3e-60

>gi|300311308|ref|YP_003775400.1| exopolysaccharide biosynthesis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 466

 Score =  224 bits (571), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 108/152 (71%), Positives = 131/152 (86%), Gaps = 1/152 (0%)

Query: 1   VGGNATILAKRESEIRADFEAQKRKVLEMNRTRDELAVLSRELESAQRAYEMTSQRFAQT 60
           V  NA+IL KRE+EIR++F AQK+KVLE+NRTRDEL+VLSR+L+SAQRAYE+T+QRF QT
Sbjct: 308 VATNASILQKREAEIRSEFNAQKQKVLELNRTRDELSVLSRDLDSAQRAYELTAQRFTQT 367

Query: 61  SLEGQSNQSDISLLSAAVPPVNPSSPRILINLILAVFVGGILGVMTALGLELTNRRVRSE 120
           +LEGQSNQSDIS+L++A+PP  PSSPR+ INLIL++FVG +LGVM ALGLEL NRRVRSE
Sbjct: 368 NLEGQSNQSDISILASAMPPTAPSSPRLFINLILSMFVGLVLGVMAALGLELINRRVRSE 427

Query: 121 QDLVEELGLPVLGSITRPVTSSSR-RRFGFGR 151
            DLVE +GLPVLG+I+ P     R RR GFGR
Sbjct: 428 ADLVEGIGLPVLGTISHPAAQKGRDRRLGFGR 459


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 331,614
Number of extensions: 10041
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)