BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0552.p
         (545 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311310|ref|YP_003775402.1| exopolysaccharide methanolan sy...   721   0.0  

>gi|300311310|ref|YP_003775402.1| exopolysaccharide methanolan
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 547

 Score =  721 bits (1860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/546 (67%), Positives = 439/546 (80%), Gaps = 7/546 (1%)

Query: 4   QTLRPMRQQPFSGLPWLVVAAGLAAMYVPSFIDLFHGVWGTERNAHGPIVLAVACCYLFV 63
           QTL P +++    L WL+VA GLAAMYVPSF+DL HGVWG+ERNAHGPIVL VAC YL V
Sbjct: 5   QTLNPPQERSPGPLSWLLVALGLAAMYVPSFVDLLHGVWGSERNAHGPIVLVVACVYLGV 64

Query: 64  RVRQLHQDGLIERRPAPIAGMVFLLLGLLCFVLGRSQTVLFMEAGSLIPILIGIVLLQFG 123
           R+RQL   GLIER+PAP+AG + +LLGLLCF LGR+QTVLFMEAGSLIPIL+GIVLL +G
Sbjct: 65  RIRQLRDAGLIERQPAPLAGSLMVLLGLLCFALGRAQTVLFMEAGSLIPILVGIVLLVYG 124

Query: 124 IRTCRRLWFAFFFMLFMVPLPASVVDLLTQPLKIGVSYASELILRQFGYPIARSGVILYI 183
           ++TCRRLWFAFFFMLFMVPLPASVVD+LTQPLKIGVSYA++ +L+   YP+ARSGVI+ I
Sbjct: 125 VKTCRRLWFAFFFMLFMVPLPASVVDVLTQPLKIGVSYAAQHLLQWLDYPVARSGVIISI 184

Query: 184 GPYQLLVADACAGLNSLFTLEALGLLYMNLVRHQSLFRNLVLAVLIVPISFTANTVRVMV 243
           GPYQLLVADACAGLNSLFTLEALGLLYMNLVRH SL RN +LA+LIVPISFTANTVRV+V
Sbjct: 185 GPYQLLVADACAGLNSLFTLEALGLLYMNLVRHPSLVRNTLLALLIVPISFTANTVRVVV 244

Query: 244 LALITYYLGDAAGQGFLHGFAGMLLFFVALGLIIALDSLLRWIAVRHAAWRVALL--ADL 301
           LALITYYLGDAAGQGFLHGFAGMLLFFVALGLII +DSLLRWIAV+ A  R   L  A +
Sbjct: 245 LALITYYLGDAAGQGFLHGFAGMLLFFVALGLIIGMDSLLRWIAVQLARGRGRALPAAPV 304

Query: 302 RQRAAAAAQDTTQFSMNLRLSIAVVIA--MVVSVGLVQLLVPREVNVVKKGNFATVIPTQ 359
           R++ AA  +    F+  LRL +A V+A  M+VSVG    L P + +V K   FAT +P +
Sbjct: 305 RRQPAAPLRQDGLFA--LRLPVAAVLAGGMLVSVGAAYALAPHQESVAKTAPFATFLPQR 362

Query: 360 FGQWKEVPSPFLQVNVGLEDGTDRSTDQPYDDVLGRTYVNSQGQMVMLALAYAKEQTQDV 419
           FG W+ VPSP+LQV+  L++GT R+ +QPYDD + RTYVNS+GQ VMLALAYA+EQ QDV
Sbjct: 363 FGDWRMVPSPYLQVSTALQEGTGRTAEQPYDDEIARTYVNSRGQQVMLALAYAREQMQDV 422

Query: 420 KIHLPEVCYVAQGFVLSGKERVAIPVRAGSQPVMGSRFVASRQNRVEAVTYWVRIGDGFP 479
           KIH PEVCYVAQGF LSG++ +++   A  + + G RF+A   +R+E VTYW RIGD  P
Sbjct: 423 KIHPPEVCYVAQGFTLSGQQPLSMRA-ADGKTIEGRRFLARSGDRMEPVTYWTRIGDALP 481

Query: 480 NGGLAARLKIFEDGMAGRISDGILVRASTLVQEGASQADEFALQQRFLEDLQSAVGAANP 539
            GGL ARL IF  GM GRI+DGILVRAS+L+ + + Q   FALQQ FL+DL++A+   NP
Sbjct: 482 VGGLDARLTIFRQGMQGRIADGILVRASSLISDPSGQDAAFALQQGFLQDLEAALRKNNP 541

Query: 540 GLLVPA 545
           GLL+PA
Sbjct: 542 GLLLPA 547


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.142    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,596,717
Number of extensions: 66036
Number of successful extensions: 270
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 2
Length of query: 545
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 455
Effective length of database: 1,193,720
Effective search space: 543142600
Effective search space used: 543142600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 133 (55.8 bits)