BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0551.p
         (471 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311311|ref|YP_003775403.1| cholera toxin secretion EpsM pr...   563   e-161

>gi|300311311|ref|YP_003775403.1| cholera toxin secretion EpsM
           protein [Herbaspirillum seropedicae SmR1]
          Length = 478

 Score =  563 bits (1451), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 301/465 (64%), Positives = 369/465 (79%), Gaps = 5/465 (1%)

Query: 1   MRKINLDLTQLLILAAGVMVAVLVGMVLPVAATLLGDSVGRLAAVPALFLLGAIFVFNKR 60
           M++ +LD +Q L+LAA V+V++LVGM LPVA  LLGDSVGRLAA+PALF+LG +F+FN++
Sbjct: 1   MKRYSLDRSQWLLLAAAVLVSILVGMALPVAIALLGDSVGRLAALPALFVLGGLFLFNRK 60

Query: 61  LLLLLILLLRASGDVVLESTRIGAGGGGAGLGGAINALIILIALLFFIERPRLLPRKAAV 120
           LLLLLI L RASGD+VLESTR+G   GG GLG AIN LIILIA LF +E+P+ LPR  AV
Sbjct: 61  LLLLLIFLFRASGDIVLESTRVG---GGMGLGAAINGLIILIAFLFVVEKPKQLPRWMAV 117

Query: 121 AWLIFLAWEAVCVVVSPNAAVGLKTALSLCSYFAVFVCAFYIVRTEDDFRFMVRLMIGSS 180
            WL+ LA  +  V++SP+    +K  LSLCSYFAVFVCAFY+VRT +DFR MV+LMI SS
Sbjct: 118 PWLVLLAVASAGVLISPDRVAAIKIVLSLCSYFAVFVCAFYVVRTPEDFRSMVKLMIASS 177

Query: 181 VIPAIYGLVSVAMAG-GVSGGFRLQSTFTHPNILAFYLTLIISLGLYVLKSPTFKLSQLQ 239
           ++PA+YG+V+  + G G    FRLQSTF HPNILAFYLTL+ISLGLYVLKSP F+L+Q +
Sbjct: 178 IVPALYGIVATGLYGRGGLANFRLQSTFGHPNILAFYLTLVISLGLYVLKSPFFRLTQFK 237

Query: 240 RFAFTGYLGVLMVLLLLTQTRSAWAAVLVLFVLYGLMFERRYLIYLLVLCCLSLLIPSVQ 299
           RFA  GY+ +L VLLLLTQTRSAW A  +L +LYGLMFERRYLIYL +L  L++L+PSVQ
Sbjct: 238 RFALMGYMLLLFVLLLLTQTRSAWIASFMLMLLYGLMFERRYLIYLAILPMLAMLVPSVQ 297

Query: 300 QRIMDLDGGGTVVGNYAKLNSFAWRVLLWESALNWMSPSRYLTGYGVEAFGYYSNVFFPL 359
           +R+M LD G TV   YAKLNSFAWRV LWES L WMSPS YLTGYGVE+F YYS  FFPL
Sbjct: 298 ERVMQLDSGNTV-QTYAKLNSFAWRVYLWESGLKWMSPSHYLTGYGVESFPYYSQTFFPL 356

Query: 360 SGNFEWKAHNVFVQLIFDIGVIGLVAYLVLFYQAFRALLRLYPRDRLGAGILICALVQYL 419
           +G  +W AH+VFVQ  FD G+IG++AYL +FY   R L++LY  DRLGA ILIC LV+YL
Sbjct: 357 AGTTKWGAHSVFVQWFFDTGLIGMLAYLSIFYMVLRKLMKLYRLDRLGAVILICTLVEYL 416

Query: 420 VVSASDNMLSYLAFNWYFWMAMGMGWSLYLNGQPADKERAGQASR 464
           VVSASDN+LSYLAFNWYFW+ +GMG S+Y+N +   +E   + +R
Sbjct: 417 VVSASDNLLSYLAFNWYFWLLLGMGCSVYMNSEAWQEELRQRKAR 461


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.331    0.144    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,180,234
Number of extensions: 42941
Number of successful extensions: 181
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 382
Effective length of database: 1,198,455
Effective search space: 457809810
Effective search space used: 457809810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 132 (55.5 bits)