BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0550.p
         (467 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311315|ref|YP_003775407.1| hypothetical protein Hsero_1998...   633   0.0  

>gi|300311315|ref|YP_003775407.1| hypothetical protein Hsero_1998
           [Herbaspirillum seropedicae SmR1]
          Length = 470

 Score =  633 bits (1633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/469 (66%), Positives = 358/469 (76%), Gaps = 3/469 (0%)

Query: 1   MQRKFSKLRQAQLCLALGCTALASAPAWAQEWGSYLKPFAADSLWNSRPVNPTFSNDVIP 60
           MQ +    R   +   LG    A+ PA A +WG+Y KPFAADSLWNSRPVNP+F+ DVIP
Sbjct: 3   MQVRTRPPRLLPMLAMLGAL-YAAMPAQADDWGTYRKPFAADSLWNSRPVNPSFAPDVIP 61

Query: 61  TSTYSPLITNSDYSTGVFLASPNDPAVTVTGPTGSNSLKIADEEVFRDITIPHWPAATKP 120
           TSTY P I    YSTGVFLASP DP VTVTG  GS  L I DEE + DITIPHWPA+ KP
Sbjct: 62  TSTYFPAINAGAYSTGVFLASPQDPPVTVTGAAGSKGLLITDEEGYHDITIPHWPASVKP 121

Query: 121 GPGGDAHADIADPSTGIIHSFWGLKQQDGKWTARLYAWTKMNGTGWPDPAHYYQGARAAG 180
             G D HADI DP+T IIHSFW LKQ   +WTA  Y+WTK++G GWPDPAHYYQGARA G
Sbjct: 122 ASGSDGHADIVDPTTNIIHSFWQLKQVGTQWTAAQYSWTKLDGRGWPDPAHYYQGARATG 181

Query: 181 VPASAGLIRIHEAAAKPEYYPHALAMTMTYNGLSAKPTYVFPATSADVNAAKVNSGPFPE 240
           VPAS GLIR HE   KP YYPHALAM++T+NGLSA PTYVFPATSAD NAAK+NSG FPE
Sbjct: 182 VPASGGLIRTHEVEQKPAYYPHALAMSLTFNGLSANPTYVFPATSADTNAAKLNSGAFPE 241

Query: 241 GALMMLPPSFDTSKITNEEVRRIAETLKRYGAYVIDANDGTPFAIFAEIGSSANPSPGGW 300
           GAL+MLPP FDTSK+T+ E+RR+AETLKRYGAY++DAN GTPFAI+ EIG+S N  P GW
Sbjct: 242 GALVMLPPDFDTSKLTDPELRRVAETLKRYGAYIVDANTGTPFAIYVEIGASYNLHPNGW 301

Query: 301 NATVSNELQTIRAALRRVTGASGWIDGNGKTFTPNQNLNLLSMRGAWTLQAGSGQATFDS 360
           N T ++ELQ IRAALRRVTGASGW+DGNG +FTPNQNLN+LSMRG WT Q+GS    + S
Sbjct: 302 NNTAASELQVIRAALRRVTGASGWVDGNGNSFTPNQNLNMLSMRGNWTQQSGSTLGKYSS 361

Query: 361 WQQSVVISGASASTIAVNYSNRGMQPVDWAKPVMGAKYKLTARATGGGKLRLTIYDKLVG 420
           W Q+VV   +S+ +  VNY+NRG+  ++WAKPV G  YKLTAR TGGGKLRL + D+  G
Sbjct: 362 WDQAVVFPASSSVSEVVNYANRGIAGINWAKPVTGRNYKLTARTTGGGKLRLLVQDQATG 421

Query: 421 KVVTDSGYLANGQSTTFVWNANTPQLIIYAQSGGAS--STVGAELIKAE 467
           K   DSGYL NGQS TF W A  P L +YA+SGG+   STVGAELI A+
Sbjct: 422 KAAFDSGYLDNGQSKTFTWTATKPALAVYARSGGSGQPSTVGAELISAD 470


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,659,941
Number of extensions: 76488
Number of successful extensions: 167
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 378
Effective length of database: 1,198,455
Effective search space: 453015990
Effective search space used: 453015990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 132 (55.5 bits)