BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0547.p
         (355 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311317|ref|YP_003775409.1| UDP-N-acetyl-d-mannosaminuronic...   412   e-116

>gi|300311317|ref|YP_003775409.1| UDP-N-acetyl-d-mannosaminuronic
           acid transferase [Herbaspirillum seropedicae SmR1]
          Length = 357

 Score =  412 bits (1059), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/354 (58%), Positives = 253/354 (71%), Gaps = 19/354 (5%)

Query: 18  LPFDLVDVQQACARMHLASKERRRCFLSTPNLNFVIACLRDLQFRETVLQSNLSVIDGMP 77
           +PFD V + QA   +  A+ ERRRCFLSTPNLNF +ACL D  FR +V+QS+LS+ DGMP
Sbjct: 1   MPFDRVSLGQAAGILQRAASERRRCFLSTPNLNFAVACLDDAAFRHSVIQSDLSIADGMP 60

Query: 78  IVWIARALGLPFTERVSGSTLFDALRSTAGRNGVDPMRIYFFGGLPGVAKLACEKINADR 137
           +VWIARALGLP  ERV+GS+LF ALR     NG  P+R+YFFGG PGVA+ A EK+NA  
Sbjct: 61  LVWIARALGLPIKERVAGSSLFQALREQRMENGQAPLRVYFFGGPPGVAQAADEKLNATP 120

Query: 138 GGMQAVGYETPGFGTVEEMSSPETIAAINQSGADFLVVALAARKGQQWVQRNRDALQVPL 197
            G+++VGY +PGFG++EEMS P+ +A IN S ADFLVVAL A+KGQ W+Q N   L+ P+
Sbjct: 121 SGLRSVGYASPGFGSIEEMSPPQALAHINDSRADFLVVALGAKKGQAWIQHNLVQLRAPV 180

Query: 198 MGHLGAVINFVAGTVSRAPVWVQKTGLEWAWRIKEEPALWRRYWNDGRTLLKLLWSVVIP 257
           + HLGAV+NFVAGTVSRAP W QKTGLEW WRIKEEP LWRRY++DG  LL+LL + V+P
Sbjct: 181 VSHLGAVVNFVAGTVSRAPRWAQKTGLEWLWRIKEEPKLWRRYFDDGMALLRLLATRVLP 240

Query: 258 A------ARAVAAT-------------XVELLLSGAIGLPNIGRWRSLLAQAAQGQGPVV 298
                   R  AA                ELL SGA+G  N+ R R +LAQAAQG  P+V
Sbjct: 241 CIWESRRHRPAAALLDEAEIRCRLDGGDCELLFSGALGQANLARLRPVLAQAAQGDAPLV 300

Query: 299 LDCAQLTWIDSAAVGSLILLYAACMAAKRPWAIINPSASLRRQFELMCAQYLLE 352
           LDC +L +IDSAA+  L+LLY  C+   RPWAIIN SASLRRQ  L CA YLL+
Sbjct: 301 LDCTRLQYIDSAALAQLMLLYGDCVRRGRPWAIINASASLRRQITLHCADYLLQ 354


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,222,897
Number of extensions: 53394
Number of successful extensions: 208
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 269
Effective length of database: 1,212,660
Effective search space: 326205540
Effective search space used: 326205540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)