BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0542.p
         (309 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311319|ref|YP_003775411.1| glycosyl transferase [Herbaspir...   165   5e-42

>gi|300311319|ref|YP_003775411.1| glycosyl transferase
           [Herbaspirillum seropedicae SmR1]
          Length = 300

 Score =  165 bits (417), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 109/311 (35%), Positives = 161/311 (51%), Gaps = 18/311 (5%)

Query: 1   VKIAYLILAHNNPRLLERLIAELSSEHASFVLHIDSKADIAQFERLRAMPRVLFCDKRIN 60
           + IAYL+L HN P    R+I +L S  A F +H+D+K+D A +  L+    V F  +R +
Sbjct: 1   MNIAYLLLIHNTPHHTARIIDKLDSGRARFFIHLDAKSDAAAYAGLQ-REHVQFTARRHD 59

Query: 61  GAWGDFSLVQATLNMMELALQHEPQTGRVVLLSGSTLPVQPRSYIEDFFQRQADVNFMEA 120
             WG+ S V A L ++  A+Q  P   R VL+SGS  P+     IE FF   A + F+ +
Sbjct: 60  VRWGEISQVDAILELISSAVQAGP-FDRYVLISGSDYPLFGAEQIEGFFADNAHIEFINS 118

Query: 121 YPMPNEEYGKRIGRLAHYWVRRARPL-----MRYRWKLQDLIIRYAPLRDYRKALGELQP 175
            P+ +    K + R+  Y    A PL     M+  WKL   +    P R      G+L P
Sbjct: 119 VPLGSPS--KPMSRITTYCPSAADPLPRKLFMKLWWKLGLKV----PPRHIAGLFGKLVP 172

Query: 176 MAGSQWWAVTGEACRYMLDYHRQHPRLASFCKHVDCPDEFFFQTILANSEHGKDLQPSIT 235
             GS WWA+T  AC  +LD+HR+ P +  F  +  CPDE +FQTIL+NS+    ++ ++T
Sbjct: 173 HGGSTWWALTHAACTVILDFHRRRPEIYRFLVNSYCPDETYFQTILSNSDLKGRIRRNLT 232

Query: 236 YTDWQPQRDSPETLTQSYLAHFAQPVVMASERHNCPLPG-GEVLFARKFNEEPWEVVETL 294
           YT W   R +PE +T    A   Q +       +  L G G VLFARKF E    ++ T+
Sbjct: 233 YTYWVEGRANPEIMT----AEIYQRLKAGGFIDDSRLYGAGPVLFARKFREGEETLLHTI 288

Query: 295 LENNQRKAQTA 305
            ++    + +A
Sbjct: 289 DQSGALTSASA 299


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 980,574
Number of extensions: 40933
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,217,395
Effective search space: 272696480
Effective search space used: 272696480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)