BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0537.p
         (185 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312414|ref|YP_003776506.1| hypothetical protein Hsero_3114...    88   3e-19

>gi|300312414|ref|YP_003776506.1| hypothetical protein Hsero_3114
           [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score = 88.2 bits (217), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/194 (37%), Positives = 105/194 (54%), Gaps = 13/194 (6%)

Query: 1   MKKLLAASAIAMALSFAGTAAQAAPLT-----FSSNGVATFSNVITTGA-GSTFSDNYTF 54
           MKKL+ +  +A A     + A AA L        ++  +TF+     G  G TF +N+TF
Sbjct: 1   MKKLIGSLLLASAFIGMASTASAADLERTRSLIWTDATSTFNARYGEGTTGLTFLENFTF 60

Query: 55  SLPGNSSA-SGSLTTITLGQLLGLAINSVTLTNTTTNTVFNAVLNSSSTATGTNYSIPVT 113
           ++    SA S ++ +I L  L  L I+S TL+     T+    L    T T   +S+   
Sbjct: 61  TVDAVGSAVSSAVVSIALDGLSRLGIDSFTLSGNG-RTITGTPLLEGDTQT---FSLRTD 116

Query: 114 LLTGGSYKLNIAGSVSGLSGGFYAGGLNVAAVPEASTTAMMLGGLALVGFVALRRRRN-- 171
            L+ G Y L++AG++ G  GG +AG ++VA VPEASTTAMMLGGL ++GF A RRRR   
Sbjct: 117 GLSTGLYTLSVAGTILGSEGGSFAGNISVAPVPEASTTAMMLGGLGIIGFAAYRRRRKAG 176

Query: 172 EDSKSFAASQMTAA 185
           ED+      Q+  A
Sbjct: 177 EDAPQQRNDQLMPA 190


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.312    0.124    0.328 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 346,004
Number of extensions: 10148
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,241,070
Effective search space: 130312350
Effective search space used: 130312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)