BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0526.p
         (303 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313614|ref|YP_003777706.1| DNA recombination-dependent gro...   470   e-134

>gi|300313614|ref|YP_003777706.1| DNA recombination-dependent growth
           factor C protein [Herbaspirillum seropedicae SmR1]
          Length = 308

 Score =  470 bits (1209), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 221/302 (73%), Positives = 260/302 (86%), Gaps = 1/302 (0%)

Query: 2   FRNAQIYRLPKAWGITAEQLAQHLAPQTFTPAGNMDMQSQGWIQPRESSNGLVHQVNRQF 61
           F+N QIYRLP  W I+A++L  HLAPQ FT   ++DMQSQGW+ PR ++  LVH VNRQ 
Sbjct: 3   FKNLQIYRLPAPWAISADELESHLAPQAFTACSSLDMQSQGWVPPR-NNEKLVHVVNRQL 61

Query: 62  LLRLQTEKKILPSSVINQLTRERAKELEEQQGFPPGRKQTKELKEQVTDELLPRAFTRLS 121
           L++L TEKK+LPS+VINQ+T+ RA ELEEQQGFPPGRKQTKELKEQVTDELLPRAF+ + 
Sbjct: 62  LMKLDTEKKLLPSTVINQVTKARAAELEEQQGFPPGRKQTKELKEQVTDELLPRAFSVVR 121

Query: 122 SMWVWIDPVNGWLVADASSPAKAEEALKLLFKAVPRFPLETVRTVMSPGAAMTDWLASDE 181
           S WVWIDPVNGWL+ DA SP+KAEE LKLLFKA+P+FPLET+RTVMSP AAMTDWLASDE
Sbjct: 122 STWVWIDPVNGWLLVDAGSPSKAEEVLKLLFKAIPKFPLETLRTVMSPAAAMTDWLASDE 181

Query: 182 APDGFTVDQDTELRSTAESRATVRYVRHTLEADQLRQHIETGKQCTRLALTWADKISFTL 241
           AP+GFTVDQDTELRSTAES+ATVRYVRHTLEA+ +R+HIE GKQCTRLALTWADK+SF L
Sbjct: 182 APNGFTVDQDTELRSTAESKATVRYVRHTLEAEDIRRHIEAGKQCTRLALTWADKVSFVL 241

Query: 242 AENLSIKKIALLDVLKENHDLTGKNDDERFDGDFVLFAAEAGQLISALVAALGGELPPAE 301
            ENLS+K+IA LDVLKE+ ++ GKNDDERFDGDF+L   E  +L++ALV ALGG+L   +
Sbjct: 242 TENLSVKRIAPLDVLKEDSEIAGKNDDERFDGDFMLMTGELAKLLTALVDALGGQLREND 301

Query: 302 GA 303
           GA
Sbjct: 302 GA 303


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 961,109
Number of extensions: 37258
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,217,395
Effective search space: 265392110
Effective search space used: 265392110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)