BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0500.p
         (298 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311214|ref|YP_003775306.1| periplasmic serine protease [He...    63   3e-11

>gi|300311214|ref|YP_003775306.1| periplasmic serine protease
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score = 62.8 bits (151), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 4/161 (2%)

Query: 124 GIAFDIDSPGGE--VAGLF-DLVDAMYGCRGIKPMHAILSEAAYSAGYAIASACDHISVP 180
           G+   I+SPGG    AG+  D +  +      KP++ ++ E   S GY IA+A D I V 
Sbjct: 127 GVILKINSPGGSPVQAGMINDEITRLRKQYPKKPIYVVVEEVCASGGYYIAAAADKIFVN 186

Query: 181 RTGGTGSVGVICMHVDFSKALTAAGIAVTMIHYGDRKADGHSEIPLSKEALQLFQADIDA 240
           +    GSVGV+     F+  +   G+   ++  G+ K+      P S +  +  Q+ +  
Sbjct: 187 KASLVGSVGVLMDGFGFTGLMDKLGVERRLLTAGENKSFLDPFSPQSPKQREYAQSMLQE 246

Query: 241 MGSLFVETVARNRGMKVSAVRAT-QATTFLGATGVEIGFAD 280
           +   F+E V + RG ++     T     + G+  VE+G AD
Sbjct: 247 IHQQFIEVVRQGRGARLKETPDTFSGLVWTGSKAVELGLAD 287


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 897,352
Number of extensions: 36580
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,217,395
Effective search space: 259305135
Effective search space used: 259305135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)