BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0478.p
         (405 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311312|ref|YP_003775404.1| glycosyl transferase group 1 fa...   295   3e-81
gi|300312060|ref|YP_003776152.1| glycosyl transferase group 1 pr...    63   4e-11

>gi|300311312|ref|YP_003775404.1| glycosyl transferase group 1
           family protein [Herbaspirillum seropedicae SmR1]
          Length = 419

 Score =  295 bits (756), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 177/405 (43%), Positives = 235/405 (58%), Gaps = 5/405 (1%)

Query: 2   RIAYLTSIYARASDTFIRNEVLELRRRGHEVHTFSIRREAGDAA-VSADVKSEQASTDYI 60
           +IAY  + Y + S +FIR E+  +  +G EV   ++R    DA  V  D ++E   T Y+
Sbjct: 4   KIAYFINQYPKVSHSFIRREIAAVEAQGFEVVRIALR--GWDAEIVDDDDRAELGRTRYV 61

Query: 61  LENGLPRLLGVALTTLLQSPGRVLEVLKLARRTRAAGLRPALLHVLYLIEACYLARRLRE 120
           L  G+  LL   L  L  +PGR L  L LA +    G R    H+ YL EA  +A+    
Sbjct: 62  LRRGMAGLLAPLLRQLTAAPGRFLAALGLALKMARRGERGLPYHLAYLAEAAQVAQWCAA 121

Query: 121 QKIEILHNHIAENSATVAMYASMLSGIPYSMTVHGPGIFFHPVAWALGEKVQRSAFTATI 180
           + +  +H H   NSA + M A  L G  YS TVHGP  F  P A  L EK++RSAFT  I
Sbjct: 122 EGVRHIHAHFGTNSAEIVMLAQCLGGPSYSFTVHGPEEFDKPQALGLDEKIRRSAFTVAI 181

Query: 181 THFCKSQCMLFSEVEAWPRLNVVRCGVGPAFEDAPALPIPEVP-RLVFVGRLCAEKGVPL 239
           T FC+SQ   + E  AW ++ +V CG+  AF  A A   P++  RLV +GRLC +KG  L
Sbjct: 182 TSFCQSQLYRWVEQSAWDKVAIVHCGLERAFY-AGAPTTPQIALRLVCIGRLCEQKGQLL 240

Query: 240 LIEAVTRHVKAGKPCELVLVGDGPLRPFIEKAMAGGPLANVIRILGWKSSAEVRAEIERS 299
           L+EA  + ++ G   ELVL GDG +R  IE+ +A   L   IRI GW SSA+VR E+  +
Sbjct: 241 LVEAAAQLMRRGVAFELVLAGDGEMRAQIEERIAHHDLQQHIRITGWISSAQVREELLAA 300

Query: 300 RALVLPSFAEGLPVVVMEALALSRPVISTRIAGIPELVEDGVNGWVVAPGSVDALVTAID 359
           RA+VLPSFAEGLPVV+MEA+AL RPV++T IAGIPELV    NGW+   G ++ L  A+ 
Sbjct: 301 RAMVLPSFAEGLPVVIMEAMALRRPVLTTYIAGIPELVIHEENGWLFPAGDIERLTDAMQ 360

Query: 360 EVTSASVEQLQAMGQHGAQAVRQKHHLGTEVGKLEQLFAAHGRPQ 404
               A+ EQL AMGQ       ++H +  E  KL +LF AH  PQ
Sbjct: 361 ACLQATPEQLAAMGQAAQLRAVERHSVNVEAAKLARLFNAHLAPQ 405


>gi|300312060|ref|YP_003776152.1| glycosyl transferase group 1
           protein [Herbaspirillum seropedicae SmR1]
          Length = 388

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 12/133 (9%)

Query: 220 PEVPR--LVF--VGRLCAEKGVPLLIEAVTRHVKAGKPCE-----LVLVGDGPLRPFIEK 270
           PE+P   +VF  VGR+   K    L+ A    + A +P +     L +VG+GPL P +  
Sbjct: 190 PELPAGCMVFGAVGRVQDVKDHATLVNAFIA-LLAMRPQQRARLRLAIVGEGPLLPALRA 248

Query: 271 AMAGGPLANVIRILGWKSSAEVRAEIERSRALVLPSFAEGLPVVVMEALALSRPVISTRI 330
            +    +A+++ + G +   EV   + R    +L S AEG+PV ++EA+A   PVIST +
Sbjct: 249 QVQAAGIADLVWLPGARMDVEVM--MRRFSVFMLSSIAEGVPVTILEAMATGLPVISTAV 306

Query: 331 AGIPELVEDGVNG 343
            G+PE+V +G  G
Sbjct: 307 GGVPEVVTEGATG 319


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,267,291
Number of extensions: 53038
Number of successful extensions: 228
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 3
Length of query: 405
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 318
Effective length of database: 1,207,925
Effective search space: 384120150
Effective search space used: 384120150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)