BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0476.p
         (384 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312886|ref|YP_003776978.1| acetyltransferase [Herbaspirill...    59   9e-10

>gi|300312886|ref|YP_003776978.1| acetyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 364

 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 144/357 (40%), Gaps = 63/357 (17%)

Query: 6   QTLYQGQAKIEELESIRGMAALLVVFYHIPNWNPLFDI------------GIVRSGYLMV 53
            ++ Q  A+I+ L   RG++ LLV+F+H     PL D              I R+G   V
Sbjct: 1   MSIAQRNARIDVL---RGVSILLVLFHHFNIAYPLKDTVPATIFATPVVQAIARNGNYGV 57

Query: 54  HLFFVLSGFVIYNAYA---ARIDSAQDLMRFQFLRFGRLYPVHLLFLLVYVLFEVAKYVG 110
            +FFV+SG+++         R+D A D  RF  LR  R+ P   L L +  L        
Sbjct: 58  TIFFVISGYLMTANTLRRWGRLD-AIDARRFYALRAWRILPCMFLLLAMVSLL------- 109

Query: 111 QARLGIVSPNSQPFRENSL----TALVQQIF----LVQAIGPAGHPTSFNTPAWSISVEF 162
            A LG     ++ F E  L    TAL    F    L+   G   +P       WS+SVE 
Sbjct: 110 -AALGGTLFQNRGFGEPPLPMWMTALASLTFWMNVLIAQHGWVNYPLGV---LWSLSVEG 165

Query: 163 YTYLIFGAIVLCLPR---IKNLLFSLLAMASLLMLVTNATFGFGDL---LKCLAGFFIGC 216
             YL F  + L L R   I       +    L  L      G G L   L C  G  IGC
Sbjct: 166 VFYLAFPVVCLTLRRPLFIGAFCLLFIVAGPLYRLAHQGDEG-GFLYAYLACFDGIAIGC 224

Query: 217 LTAFTVQR--LPLAFPRAL-SLILFAAIVAFLHWKTSERYD---AVIYLLSALLIA---- 266
            TA  V R   P    R L  + + A  + +L W  S         + L +ALL+A    
Sbjct: 225 CTAILVARGTHPWISTRWLQCMTILAMALLYLCWPISRSNVLGVTAMALGTALLLAGASG 284

Query: 267 -SVVAVKDGYLNRLLNLKVLTWLGAVSYAVYMSHVAVIWVLSQVMRVVLKKPEAMIG 322
            +V A   GY         L + G +SY +Y+ H+ V+ ++   +  +    E  +G
Sbjct: 285 KTVAARSAGY-------SFLAFCGGLSYEIYLFHLIVLGLMRTAIPPITASSEVKLG 334


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.141    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 951,054
Number of extensions: 30958
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,207,925
Effective search space: 358753725
Effective search space used: 358753725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 131 (55.1 bits)