BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0472.p
         (238 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311335|ref|YP_003775427.1| methyl-accepting chemotaxis pro...   288   3e-79

>gi|300311335|ref|YP_003775427.1| methyl-accepting chemotaxis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 553

 Score =  288 bits (737), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 150/188 (79%), Positives = 165/188 (87%)

Query: 19  PWVAGLVLGGAGALGLHAAGAAQLLSAPGCSGVAVVLGLAGFALAQRRAQPGEGQLVDKI 78
           PW+AGL++G    L L A GA Q L  P    + V+LG+A FA  ++R+QP   QLVD+I
Sbjct: 22  PWLAGLLVGSLAGLALDALGAGQWLPGPVIHALGVLLGMAVFAPLRQRSQPQGNQLVDRI 81

Query: 79  SGEIDHIMIGAAETSFFVDTIKTKISKDVVAADRIAASAEQNAATTEQIAANAERASAIA 138
           SGEIDHIMIGAAETSFFVDTIKTK+SKDV AA+RIAASAEQNAATT+QIAANAERAS+IA
Sbjct: 82  SGEIDHIMIGAAETSFFVDTIKTKLSKDVDAANRIAASAEQNAATTQQIAANAERASSIA 141

Query: 139 AEVRTESVSGRSEVDRGLQQIGQARTDALSASSMMAQLQEKSRRIHGITEVISEIAARTN 198
           +EVRTESVSGRSEVDRGLQQIGQARTDALSASSMMAQLQEKSRRIHGITEVISEIAARTN
Sbjct: 142 SEVRTESVSGRSEVDRGLQQIGQARTDALSASSMMAQLQEKSRRIHGITEVISEIAARTN 201

Query: 199 LLALNAAI 206
           LLALNAAI
Sbjct: 202 LLALNAAI 209


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.128    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 358,205
Number of extensions: 8310
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 2
Length of query: 238
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 156
Effective length of database: 1,231,600
Effective search space: 192129600
Effective search space used: 192129600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)