BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0471.p
         (328 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311335|ref|YP_003775427.1| methyl-accepting chemotaxis pro...   571   e-164

>gi|300311335|ref|YP_003775427.1| methyl-accepting chemotaxis
           protein [Herbaspirillum seropedicae SmR1]
          Length = 553

 Score =  571 bits (1471), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 280/320 (87%), Positives = 297/320 (92%), Gaps = 5/320 (1%)

Query: 1   VRQLAQRTKEATDDIGVMVRAITEEAERAATGMNSLSSRVLEAAQNVEKVHGLLNSIERS 60
           VRQLAQRTKEATDDIG MVRAITEEAERAA+GMNSLSSRVLEAAQNVEKVHGLLNSIERS
Sbjct: 228 VRQLAQRTKEATDDIGTMVRAITEEAERAASGMNSLSSRVLEAAQNVEKVHGLLNSIERS 287

Query: 61  SSQSQEQIEEIAVASREHVQTTQEIAEAITDIRNGMLQTDHELPRVAASAMVLSERAEAV 120
           +SQSQEQIEEIAVASREHVQTTQEIA+AITDIRNGMLQTD ELPRVAASAM LSERAEAV
Sbjct: 288 ASQSQEQIEEIAVASREHVQTTQEIADAITDIRNGMLQTDTELPRVAASAMQLSERAEAV 347

Query: 121 FEAIIDGGARGGHDDIRVAATGAAQAVGKLFETAIRSGQISEAALFDRTYKPIPNTSPQK 180
           FEAI++GGARGGHDDIR+AA  AA AVGKLFE +IR+G I+EAALFDR YKPIPNTSPQK
Sbjct: 348 FEAIVEGGARGGHDDIRIAAADAAAAVGKLFEESIRAGVITEAALFDRHYKPIPNTSPQK 407

Query: 181 HSSQFDGFTDRVLPAIQEALLASMPQLAYAGAVDNNGYFPTHNKKFSQPLTGDYDTDLVN 240
           HSSQFD FTDRVLPAIQEALL  MPQLAYAGAVDNNGYFPTHNKKFSQPLTG+YD DLVN
Sbjct: 408 HSSQFDAFTDRVLPAIQEALLERMPQLAYAGAVDNNGYFPTHNKKFSQPLTGNYDVDLVN 467

Query: 241 NRTKRIFSDRTGKRCGANTRPFLLQTYKRDTGEVMHDLSVPIYVNGKHWGGFRVGYRSSH 300
           NRTKRIFSDRTGKRCG+NT+PFLLQTYKRDTGEVMHDLSVPI+V+GKHWGGFRVGYRSSH
Sbjct: 468 NRTKRIFSDRTGKRCGSNTKPFLLQTYKRDTGEVMHDLSVPIHVHGKHWGGFRVGYRSSH 527

Query: 301 APASGDA-----VPAKXRLS 315
           APA   A     VP+  ++S
Sbjct: 528 APAPAVATTPAPVPSPAKVS 547


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 868,426
Number of extensions: 34782
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,212,660
Effective search space: 293463720
Effective search space used: 293463720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)