BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0467.p
         (201 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311337|ref|YP_003775429.1| chemotaxis protein [Herbaspiril...   400   e-113
gi|300313512|ref|YP_003777604.1| chemoreceptor glutamine deamida...   310   7e-86

>gi|300311337|ref|YP_003775429.1| chemotaxis protein [Herbaspirillum
           seropedicae SmR1]
          Length = 201

 Score =  400 bits (1027), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/201 (96%), Positives = 199/201 (99%)

Query: 1   MSHASEQIATNLYYDRTFDCDAAKILPGEFYFTSKDMMIVTVLGSCVSACIRDRVSGIGG 60
           MS ASEQIA+NLYYDRTFDCDAAKILPGE+YFT+KDMMIVTVLGSCVSACIRDRVSGIGG
Sbjct: 1   MSQASEQIASNLYYDRTFDCDAAKILPGEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGG 60

Query: 61  MNHFMLPDGGGDDGSPVSASARYGTYAMEVLINEVLKSGARRENLEAKVFGGGNVLRGFS 120
           MNHFMLPDGGGDDGSPVSASARYGTYAMEVLIN+VLKSGARRENLEAKVFGGGNVLRGFS
Sbjct: 61  MNHFMLPDGGGDDGSPVSASARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGFS 120

Query: 121 AINVGERNAEFVRRYLKAEGIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNDTLVN 180
           AINVGERNAEFVRRYLKAE IRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHN+TLV+
Sbjct: 121 AINVGERNAEFVRRYLKAENIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNNTLVD 180

Query: 181 REKAYASKLVTKPVGGEVDLF 201
           REKAYASKLVTKPVGGEVDLF
Sbjct: 181 REKAYASKLVTKPVGGEVDLF 201


>gi|300313512|ref|YP_003777604.1| chemoreceptor glutamine deamidase
           [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score =  310 bits (793), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 148/196 (75%), Positives = 171/196 (87%), Gaps = 1/196 (0%)

Query: 6   EQIATNLYYDRTFDCDAAKILPGEFYFTSKDMMIVTVLGSCVSACIRDRVSGIGGMNHFM 65
           E  A+ +Y+DR FDC  AKILPGE+++T +DMMIVTVLGSCVSAC+RDRVSG+GGMNHFM
Sbjct: 9   ENFASYVYHDRAFDCATAKILPGEYFYTGEDMMIVTVLGSCVSACLRDRVSGVGGMNHFM 68

Query: 66  LPDGGGDDGSPVSASARYGTYAMEVLINEVLKSGARRENLEAKVFGGGNVLRGFSAINVG 125
           LPDGGG+  SPVSAS RYGTYAMEVLIN+VLK+GARRENLE KVFGGG VLRG +A+NVG
Sbjct: 69  LPDGGGEADSPVSASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGMNAMNVG 128

Query: 126 ERNAEFVRRYLKAEGIRVVAEDLNDIYPRKVYFFPRTGKVLVKKLKQMHNDTLVNREKAY 185
           ERNA FVR +L AE IRVVAEDLNDI+PRKV+FFPRTGKVLVKK+K+   D L +RE+ Y
Sbjct: 129 ERNAAFVRSFLSAEKIRVVAEDLNDIWPRKVHFFPRTGKVLVKKIKEAGAD-LTSREREY 187

Query: 186 ASKLVTKPVGGEVDLF 201
           AS+L  KPVGGE+DLF
Sbjct: 188 ASRLQAKPVGGEIDLF 203


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 542,885
Number of extensions: 18799
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 2
Length of query: 201
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,236,335
Effective search space: 148360200
Effective search space used: 148360200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)