BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0036.0464.p (131 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbas... 267 2e-73 gi|300310884|ref|YP_003774976.1| chemotaxis regulator protein [H... 166 5e-43 gi|300311293|ref|YP_003775385.1| chemotaxis regulator protein [H... 160 3e-41 gi|300311026|ref|YP_003775118.1| chemotaxis response regulator r... 156 4e-40 gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas... 99 9e-23 >gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 131 Score = 267 bits (683), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 131/131 (100%), Positives = 131/131 (100%) Query: 1 MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNM 60 MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNM Sbjct: 1 MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNM 60 Query: 61 PNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKL 120 PNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKL Sbjct: 61 PNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKL 120 Query: 121 GKIFEKMAAGG 131 GKIFEKMAAGG Sbjct: 121 GKIFEKMAAGG 131 >gi|300310884|ref|YP_003774976.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1] Length = 133 Score = 166 bits (420), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 83/130 (63%), Positives = 97/130 (74%), Gaps = 2/130 (1%) Query: 1 MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRS--DQFDFVVSDW 58 M+ FLVVDDFSTMRRIV LLKEL YT + EA+DG AL+ L S FV++DW Sbjct: 1 MAATEQHFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILESGASNITFVLTDW 60 Query: 59 NMPNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDE 118 NMP MDGLT+L++IR PALS LPVLM+TAEAKKENIV AAQ GA+GY+VKPF A TL E Sbjct: 61 NMPVMDGLTLLKKIRSTPALSHLPVLMITAEAKKENIVMAAQEGADGYIVKPFNATTLKE 120 Query: 119 KLGKIFEKMA 128 K+ KI + A Sbjct: 121 KIEKILARRA 130 >gi|300311293|ref|YP_003775385.1| chemotaxis regulator protein [Herbaspirillum seropedicae SmR1] Length = 135 Score = 160 bits (405), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 79/130 (60%), Positives = 100/130 (76%), Gaps = 2/130 (1%) Query: 1 MSGPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQF--DFVVSDW 58 M+ + FLVVDDFSTMRRIV LLKEL YT + EA+DG AL+ L + FV++DW Sbjct: 1 MAADDQYFLVVDDFSTMRRIVSGLLKELEYTKIVEADDGSSALKILEAGALPVTFVLTDW 60 Query: 59 NMPNMDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDE 118 NMP MDGLT+L++IR P+++ LPVLM+TAEAKKENIV AAQ+GA+GY+VKPF AATL + Sbjct: 61 NMPVMDGLTLLKKIRATPSMAHLPVLMITAEAKKENIVEAAQSGADGYIVKPFNAATLKD 120 Query: 119 KLGKIFEKMA 128 K+ KI + A Sbjct: 121 KIEKILARRA 130 >gi|300311026|ref|YP_003775118.1| chemotaxis response regulator receiver domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 134 Score = 156 bits (395), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 76/129 (58%), Positives = 98/129 (75%), Gaps = 2/129 (1%) Query: 5 NTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQF--DFVVSDWNMPN 62 + FLVVDDFSTMRRI+ LLKEL Y V +A+DG A + L S FV++DWNMP Sbjct: 4 DQHFLVVDDFSTMRRIIIGLLKELEYLKVTDADDGTSAWKILESGALPISFVITDWNMPG 63 Query: 63 MDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGK 122 MDGL +L++IR+ P L +LPVLMV+AEAKKENIV AA+ GA+GY+VKPF AATLD+K+ K Sbjct: 64 MDGLGLLKKIRETPRLKRLPVLMVSAEAKKENIVLAAETGADGYIVKPFNAATLDDKISK 123 Query: 123 IFEKMAAGG 131 I ++ ++ G Sbjct: 124 ILQRRSSMG 132 >gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 99.4 bits (246), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 52/117 (44%), Positives = 75/117 (64%), Gaps = 1/117 (0%) Query: 8 FLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNMPNMDGLT 67 L VDD ++R++V LK GY NV EA DGV AL+K +S FD V++D NMP MDGLT Sbjct: 5 ILAVDDSGSLRQMVVFSLKAAGY-NVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMDGLT 63 Query: 68 MLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGKIF 124 +++ +R+ + +++P+LM+T E E AGANG++VKPF L E + K+ Sbjct: 64 LIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 365,998 Number of extensions: 12771 Number of successful extensions: 173 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 172 Number of HSP's successfully gapped: 45 Length of query: 131 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 56 Effective length of database: 1,264,745 Effective search space: 70825720 Effective search space used: 70825720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 125 (52.8 bits)