BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0462.p
         (374 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311341|ref|YP_003775433.1| flagellar biosynthesis FlhB tra...   626   0.0  
gi|300310132|ref|YP_003774224.1| type III secretion HrcU transme...   127   1e-30

>gi|300311341|ref|YP_003775433.1| flagellar biosynthesis FlhB
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score =  626 bits (1615), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/391 (82%), Positives = 348/391 (89%), Gaps = 17/391 (4%)

Query: 1   MAEDSDMERTEPATGKRIERAREQGDVPRSRELATTLMLLVGGSCVWLFSGPVVTALDRI 60
           MAEDSDMERTEPATGKRIERAREQGDVPRSRELAT L+LLVGGSCVW+FSGPVVT+LDRI
Sbjct: 1   MAEDSDMERTEPATGKRIERAREQGDVPRSRELATCLVLLVGGSCVWMFSGPVVTSLDRI 60

Query: 61  MVATLTFERAAAFDPALLFDMLSAHMLDVAVSMIPLAFLMTLAAMAAPLMLGGWLFNVDS 120
           MVA ++ ERAA +DP +L +++SA  LDVA+++IPLAFLMTLAAMAAPL LGGWLFNV S
Sbjct: 61  MVAMMSLERAAIYDPVVLMNLISARCLDVAIAVIPLAFLMTLAAMAAPLTLGGWLFNVSS 120

Query: 121 LAPKFSKLNPISGFANMFSINSLVELGKAVLKTLLVGTVAWIAIRSQLDAVMGLGVESLK 180
           LAPKFSKLNPISGFANMFS+NSLVELGKAVLKTLLVGTVAW+ IRSQLDAVMGLGVESLK
Sbjct: 121 LAPKFSKLNPISGFANMFSVNSLVELGKAVLKTLLVGTVAWVTIRSQLDAVMGLGVESLK 180

Query: 181 TAGSHAAQLLWISFITMVSALILIAALDVPYQIWNYGRKLRMTREEVKQEHKESEGDPHI 240
           TAG+HAAQLLWISFITMVSALI IA LDVPYQ+WNYGRKLRMTREEVKQEHKESEGDPHI
Sbjct: 181 TAGAHAAQLLWISFITMVSALIFIAVLDVPYQLWNYGRKLRMTREEVKQEHKESEGDPHI 240

Query: 241 KGKIRAMQRAMARRRMMAEVPTAXDIPD-----------------APKVVAKGADDVAAK 283
           KGKIRAMQRAMARRRMMAEVPTA  +                   APKVVAKG+D++AAK
Sbjct: 241 KGKIRAMQRAMARRRMMAEVPTADVVVTNPTHYAVALKYSEGKMGAPKVVAKGSDEIAAK 300

Query: 284 IRELAREHKVPLLEAPPLARALHAHTEIGDEIPEALYTAVAEVLAYVFQLRTFGQFGGNR 343
           IRELAREH+VPLLEAPPLARALH HTEIGDEIPEALYTAVAEVLAYVFQLRT+GQFGG R
Sbjct: 301 IRELAREHRVPLLEAPPLARALHTHTEIGDEIPEALYTAVAEVLAYVFQLRTYGQFGGTR 360

Query: 344 PVEPTELNVPKDLDPATAPKKLRGPKNRNRQ 374
           PVEPT L VPK+LDP TAPKK RG + R RQ
Sbjct: 361 PVEPTGLEVPKELDPLTAPKKPRGSQRRTRQ 391


>gi|300310132|ref|YP_003774224.1| type III secretion HrcU
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 371

 Score =  127 bits (319), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/383 (29%), Positives = 179/383 (46%), Gaps = 38/383 (9%)

Query: 5   SDMERTEPATGKRIERAREQGDVPRSRELATTLMLL------VGGSCVWLFSGPVVTALD 58
           SD +  EP T K+IE A+++G +  SR+LA  + L+      +    +W   G V   ++
Sbjct: 2   SDDKNEEP-TDKKIEDAKKKGQIAVSRDLARLVTLVAVMEAALAADSLW--RGAVFNLME 58

Query: 59  R-IMVATLTFERAAAFDPALLFDMLSAHMLDVAVSMIPLAFLMTLAAMAAPLMLGGWLFN 117
             ++     F+ A       + + L+A ++ +AV+   +  +  LAA+       G L  
Sbjct: 59  GGVLGVGQDFQTA-------MNNQLTAALILLAVAFFAVLVICPLAAVVGHWGQFGMLIA 111

Query: 118 VDSLAPKFSKLNPISGFANMFSINSLVELGKAVLKTLLVGTVAWIAIRSQLDAVMGLGVE 177
            ++L PK  KLNP++G   +FS   LVEL   V K  L+  + + AI SQL A+  L   
Sbjct: 112 TEALEPKLDKLNPVNGIKQIFSKKKLVELFITVGKAALIAGMMYSAIHSQLGAIFTLAGG 171

Query: 178 SLKTAGSHAAQLLWISFITMVSALILIAALDVPYQIWNYGRKLRMTREEVKQEHKESEGD 237
             K        LL   F  ++   +++  +D   Q + + + L M +EE+K+E KESEGD
Sbjct: 172 EPKDVYEAFVTLLRNIFHLIIVVCLVLGVIDYAVQKYFHKKDLMMDQEEIKREFKESEGD 231

Query: 238 PHIKGKIRAMQRAMARRRMMAEVPTA-----------------XDIPDAPKVVAKGADDV 280
           P +KG+ + + R  A     A+   A                  D    P V+AKG D++
Sbjct: 232 PMVKGQRKQLARQWANEAPAAKTEKANAVVVNPTHFAVAMFYDADEAMVPLVLAKGRDEI 291

Query: 281 AAKIRELAREHKVPLLEAPPLARALHAHTEIGDEIPEALYTAVAEVLAYVFQLRTFGQFG 340
           A  +   A    +P++    LAR L+A  +    +P + Y AVA+V A V +L   G+  
Sbjct: 292 AQAMIARAHACGIPVIRHVWLARTLYATCQDDMPVPRSSYQAVAQVYAVVHELVASGEV- 350

Query: 341 GNRPVEPTELNVPKDLDPATAPK 363
             R VE   L  P + D  T PK
Sbjct: 351 -QREVELESLGEPPERD--TLPK 370


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 943,556
Number of extensions: 32046
Number of successful extensions: 113
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 2
Length of query: 374
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 287
Effective length of database: 1,207,925
Effective search space: 346674475
Effective search space used: 346674475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)