BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0460.p
         (496 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311343|ref|YP_003775435.1| flagellar biosynthesis GTP-bind...   868   0.0  

>gi|300311343|ref|YP_003775435.1| flagellar biosynthesis GTP-binding
           protein [Herbaspirillum seropedicae SmR1]
          Length = 494

 Score =  868 bits (2244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/498 (90%), Positives = 462/498 (92%), Gaps = 6/498 (1%)

Query: 1   MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60
           MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP
Sbjct: 1   MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60

Query: 61  NARPQAASLQQQSGAPNAQQAKRPALLSSPLAQQPARAARPENAPLLDQPAHGRAPARPV 120
           + RPQAASLQQQSG P AQQ +RPALLSSP AQ  AR AR E APLLDQP   R+ AR  
Sbjct: 61  SGRPQAASLQQQSGLPPAQQPRRPALLSSPPAQ--ARPAR-EGAPLLDQPGSERSQARAE 117

Query: 121 EAAPASDARVWRSR-RAEQAAGGRPASAQQAQESGEHDQ-RPRSALPEFDGKDYDEILSE 178
            A  A+DARVWRSR R    A  R A+   A +  E +Q RPRSALPEFDGKDYDEILSE
Sbjct: 118 AAP-AADARVWRSRTRDSGNAQRRAAAPAGAPQGQEQEQDRPRSALPEFDGKDYDEILSE 176

Query: 179 VMSEIRSMRGVLETQLAEISWGGTQKRDPLKGVVLKEMLAAGFSASLSRLITENLPANSK 238
           VMSEIRSMRGVLETQLAEISWGGTQKR+PLKG+VLKEMLAAGFSASLSRLITENLPANSK
Sbjct: 177 VMSEIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITENLPANSK 236

Query: 239 SQDIMFWVKSVLARNLNTLANENELLENGGVFALVGPTGVGKTTTTAKLAARCVMRHGSG 298
           SQDIMFWVKSVLARNLNTLANENELLENGGVFA+VGPTGVGKTTTTAKLAARCVMRHGSG
Sbjct: 237 SQDIMFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLAARCVMRHGSG 296

Query: 299 KLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQ 358
           KLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQ
Sbjct: 297 KLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQ 356

Query: 359 RDQMVAEQDAMLAGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATI 418
           RDQMVAEQDAML GAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATI
Sbjct: 357 RDQMVAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATI 416

Query: 419 GNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGELPGVI 478
           GNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGELPGVI
Sbjct: 417 GNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGELPGVI 476

Query: 479 GPTAMSMNDRGLREVSFG 496
           GPTAMSMND+GLREVSFG
Sbjct: 477 GPTAMSMNDKGLREVSFG 494


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,350,486
Number of extensions: 52601
Number of successful extensions: 234
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 233
Number of HSP's successfully gapped: 2
Length of query: 496
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 407
Effective length of database: 1,198,455
Effective search space: 487771185
Effective search space used: 487771185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)