BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0459.p
         (267 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311344|ref|YP_003775436.1| antiactivator of flagellar bios...   486   e-139

>gi|300311344|ref|YP_003775436.1| antiactivator of flagellar
           biosynthesis FleN protein [Herbaspirillum seropedicae
           SmR1]
          Length = 266

 Score =  486 bits (1251), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 244/267 (91%), Positives = 257/267 (96%), Gaps = 1/267 (0%)

Query: 1   MLERPVPRLFTFFSVLGEEEKSAMLINLAASLSQAKHSVLVVDGDVATTGLLTRIGLRHD 60
           MLERPVPRLFTFFSVL EE+KSAMLINLAASL+QAKHSVLV+DGDVATTGLLTRIGLRHD
Sbjct: 1   MLERPVPRLFTFFSVLAEEDKSAMLINLAASLAQAKHSVLVIDGDVATTGLLTRIGLRHD 60

Query: 61  VATLQEVARMERPMAEATRLLPEGFSMARIARRSVPSATDPHAGRLAEIFDSLIEQAEIT 120
           VATLQEVARMER   EATR+LPEGFSMARIARRSVPSA+DP AG+LAEIFDSLIEQAEIT
Sbjct: 61  VATLQEVARMERAPREATRMLPEGFSMARIARRSVPSASDPQAGQLAEIFDSLIEQAEIT 120

Query: 121 LVNGVLARDLSLPVPTMEMGEIVIQVSTTASSIKAAYVLLKSLSDRIGRRPFSLIVNDAT 180
           LVNGVL+ D SLPVPTMEMGEIVIQVSTTASSIKAAYVLLKSLSDRIGRRPFSLIVNDAT
Sbjct: 121 LVNGVLSADQSLPVPTMEMGEIVIQVSTTASSIKAAYVLLKSLSDRIGRRPFSLIVNDAT 180

Query: 181 EAEARTVYANMAQAASRYLAAQLNFIGAIPADDHIRRATGQGRAVMDVFPFAGAALAFQR 240
           EAEARTVYANMAQAASRYLAAQLN++GAIPADDHIRRATGQGRAVMDVFPFA AALAFQR
Sbjct: 181 EAEARTVYANMAQAASRYLAAQLNYLGAIPADDHIRRATGQGRAVMDVFPFATAALAFQR 240

Query: 241 LSKRFTAGPDAARSSYGMATDGASLGV 267
           LSK+FTA  ++ARS+YGMATDGASLGV
Sbjct: 241 LSKKFTAA-ESARSTYGMATDGASLGV 266


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.132    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 754,692
Number of extensions: 28798
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,222,130
Effective search space: 223649790
Effective search space used: 223649790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)