BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0455.p
         (244 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311348|ref|YP_003775440.1| flagellar basal body P-ring for...   385   e-108

>gi|300311348|ref|YP_003775440.1| flagellar basal body P-ring
           formation protein [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  385 bits (990), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/245 (80%), Positives = 219/245 (89%), Gaps = 1/245 (0%)

Query: 1   MKHAFRALRRTFAVLSLLAAGLGATAPALAQNDPNSPQKQDLQALQQVAEQFLKSQTSGL 60
           MKH  R LR   A L+LLA GL A +PA AQNDP +PQ+QDLQ +QQ AEQFLK+QT+GL
Sbjct: 10  MKHPLRVLRHACAALALLAGGLLALSPASAQNDPTAPQRQDLQIVQQTAEQFLKAQTAGL 69

Query: 61  PGSVTVTIDPADARLTLAACLEPQAFMPNGGRLFGRTTVGIKCVAPSPWTIYLRANVQVI 120
           PGS+T+  DP D R+ L ACL+PQAFMPNG RL+GRT+VG+KCVAP+PWTIY+RANVQVI
Sbjct: 70  PGSITIQTDPIDQRMMLPACLDPQAFMPNGARLWGRTSVGVKCVAPAPWTIYVRANVQVI 129

Query: 121 SDYLVAAVPLAQGQTISASDITRIRG-MSALPSGVITEESQVIGRVANMSLRAGTPLRLD 179
           SDYL+AAVPLAQGQTISASDI+R+RG MSALP+GVITEESQVIGRVA MSLRAGTPLR+D
Sbjct: 130 SDYLIAAVPLAQGQTISASDISRVRGDMSALPAGVITEESQVIGRVAGMSLRAGTPLRMD 189

Query: 180 TIRNQRVVQQGQAVRVVSIGPGFQISTEARALTNANEGQMAQARTAAGQVVSGIAKAGGI 239
            IRNQRVVQQGQ+VRVVS GPGFQISTEARAL+NANEGQM QARTAAGQVVSGIAKAGGI
Sbjct: 190 AIRNQRVVQQGQSVRVVSNGPGFQISTEARALSNANEGQMTQARTAAGQVVSGIAKAGGI 249

Query: 240 LEINY 244
           LEINY
Sbjct: 250 LEINY 254


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 623,756
Number of extensions: 22890
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,226,865
Effective search space: 197525265
Effective search space used: 197525265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)