BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0452.p
         (241 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311351|ref|YP_003775443.1| flagellar basal-body rod modifi...   362   e-101

>gi|300311351|ref|YP_003775443.1| flagellar basal-body rod
           modification protein [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  362 bits (928), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/241 (79%), Positives = 222/241 (92%), Gaps = 1/241 (0%)

Query: 1   MAIVSSDLLTAMNGTSSSSSTTTSSSSLDNNSPDAIQNRFLTLLIAQMKNQDPSNPMDNS 60
           MA VS+DLLTAMN  +SSSS+T++SS L +NSPDAIQNRFLTLL+AQMKNQDP+NPMDNS
Sbjct: 1   MATVSNDLLTAMN-GTSSSSSTSNSSGLTDNSPDAIQNRFLTLLMAQMKNQDPNNPMDNS 59

Query: 61  QLTTQMAQLSTVSGISQLNNSLSTLMSNLNSSQALSTANMIGHSVLAPGNSIQLTSDTTK 120
           QLT+QMAQLSTVSGISQLN++L+TLM NLNSSQALS+ANMIGHSVLAPGNS+QLTS+TTK
Sbjct: 60  QLTSQMAQLSTVSGISQLNSTLATLMGNLNSSQALSSANMIGHSVLAPGNSVQLTSETTK 119

Query: 121 DASGTETTSQKAVFGVNLSGTASSVVVTIKDSSGAVVHTTDLGTQAAGVVPVIWDGSNDT 180
           DASG + T Q AV GVNL+  ASSVVVT+KDS+GAVV T DLGTQA+GVVPVIWDG+ND 
Sbjct: 120 DASGNDVTKQHAVMGVNLATNASSVVVTVKDSTGAVVRTMDLGTQASGVVPVIWDGTNDA 179

Query: 181 GGKVADGNYTFTVSASNNGTAVSASTLSFGTVSSVSTASDGVKLNVTNVGTIKPTDVVQI 240
           G K ADGNYTF+V+ASNNGTAV+A+ L+FGTV+SVSTA+DG+KLNV+N+GTIKPTDVVQI
Sbjct: 180 GSKAADGNYTFSVAASNNGTAVNATALAFGTVASVSTAADGIKLNVSNIGTIKPTDVVQI 239

Query: 241 L 241
           L
Sbjct: 240 L 240


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.304    0.117    0.302 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 547,464
Number of extensions: 18204
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,226,865
Effective search space: 193844670
Effective search space used: 193844670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 129 (54.3 bits)