BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0447.p
         (378 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311356|ref|YP_003775448.1| flagellar basal-body P-ring pro...   636   0.0  

>gi|300311356|ref|YP_003775448.1| flagellar basal-body P-ring
           protein [Herbaspirillum seropedicae SmR1]
          Length = 376

 Score =  636 bits (1641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/378 (93%), Positives = 364/378 (96%), Gaps = 2/378 (0%)

Query: 1   MDMIRMGSKLLSAAAVAALCVAAAAPAHAERLKDLASIQGVRQNQLVGYGLVVGLDGSGD 60
           M   R+G KLL AA VAAL +AAA PA AERLKDLASIQGVRQNQLVGYGLVVGLDGSGD
Sbjct: 1   MQWTRIGRKLLGAAGVAALALAAAMPAQAERLKDLASIQGVRQNQLVGYGLVVGLDGSGD 60

Query: 61  QTTQTPFTVQSVVSMLQQLGVNVPSGTSSNMQLKNVAAAMVTATLPAFAQPGQLIDVTVS 120
           QTTQTPFTVQSV+SMLQQLGVNVP+GTSSNMQLKNVAAAMVTA LPAFAQPGQLIDVTVS
Sbjct: 61  QTTQTPFTVQSVISMLQQLGVNVPTGTSSNMQLKNVAAAMVTANLPAFAQPGQLIDVTVS 120

Query: 121 SIGNAKSIRGGTLLMAPLKGADGQIYAIAQGNIVVGGAGGSAAGSSTVINQLSAGRISGG 180
           SIGNAKSIRGGTLLMAPLKGADGQIYAIAQGNIVVGGAGGSAAGSSTVINQLSAGRISGG
Sbjct: 121 SIGNAKSIRGGTLLMAPLKGADGQIYAIAQGNIVVGGAGGSAAGSSTVINQLSAGRISGG 180

Query: 181 ATVERAVPSSLGGGDMVMLELNDNDFSTASRVVDALNKRFGSDTAVAQDGRVIRVRICAP 240
           ATVERAVPSSLG  DM++LELNDNDFSTASRVVDALNKRFG++TAVAQDGRVIRVR  AP
Sbjct: 181 ATVERAVPSSLGSSDMIVLELNDNDFSTASRVVDALNKRFGNETAVAQDGRVIRVR--AP 238

Query: 241 ISSGDRVAFLGALENVDVTPGKLAAKVILNARTGSVVMNQSVMLDTCAVSHGNLSVVIQA 300
           ISSGDRVAFLGALENVDVTPGKLAAKVILNARTGSVVMNQSVMLDTCAVSHGNLSVVIQA
Sbjct: 239 ISSGDRVAFLGALENVDVTPGKLAAKVILNARTGSVVMNQSVMLDTCAVSHGNLSVVIQA 298

Query: 301 DNAVSQPNALAGGQTAGVQNAQVSINKEPGKVMLLKGGASLSDVVKALNAIGATPQDLLA 360
           DNAVSQPNALAGGQTAGVQNAQ+SINKEPGKVMLLKGGASL++VVKALNAIGATPQDLLA
Sbjct: 299 DNAVSQPNALAGGQTAGVQNAQISINKEPGKVMLLKGGASLAEVVKALNAIGATPQDLLA 358

Query: 361 ILQAMKAAGSLRAELEVI 378
           ILQAMKAAGSLRAELEVI
Sbjct: 359 ILQAMKAAGSLRAELEVI 376


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.129    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 937,080
Number of extensions: 33819
Number of successful extensions: 177
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 291
Effective length of database: 1,207,925
Effective search space: 351506175
Effective search space used: 351506175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)