BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0446.p
         (323 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311357|ref|YP_003775449.1| flagellar basal-body protein Fl...   630   0.0  

>gi|300311357|ref|YP_003775449.1| flagellar basal-body protein FlgJ
           [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  630 bits (1625), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 305/324 (94%), Positives = 318/324 (98%), Gaps = 1/324 (0%)

Query: 1   MLNKINPSNPTEGLAVDANGLNGLREAAKQNTPESVKGAAKQFEALFLNMVMKSMRDATP 60
           MLNKINPSNPTE LAVDANGLNGLREAAKQN+PES+KGAAKQFEALFLNM+MKSMRDATP
Sbjct: 1   MLNKINPSNPTESLAVDANGLNGLREAAKQNSPESIKGAAKQFEALFLNMMMKSMRDATP 60

Query: 61  QNGPFDNEQTKMFTSMLDQQLSQSLAQRGVGLADVLTRQLSASLPKKLPDAQDLEGSPLP 120
           QNGPFDNEQTKMFTSMLDQQLSQ+LAQRGVGLADVLTRQLSASLPKKLPDAQ+L+G    
Sbjct: 61  QNGPFDNEQTKMFTSMLDQQLSQTLAQRGVGLADVLTRQLSASLPKKLPDAQELDGQTPG 120

Query: 121 GEEGLPMGIPLVKDMSDADRAKFIQSFASQQAAESTDQDGRN-KQRRNSNKPAHVEAFQN 179
           G+EGLPMGIPLVKDMS+ADRAKFIQSFASQQAAE+TDQDGRN KQRR++NKPAHVEAFQN
Sbjct: 121 GDEGLPMGIPLVKDMSEADRAKFIQSFASQQAAENTDQDGRNGKQRRSTNKPAHVEAFQN 180

Query: 180 RLQADAEMASKMTGIPAKFMLAQAALETGWGKKEIVTRDGRSAHNLFGIKATGNWTGKVV 239
           RLQADAE+ASKMTGIPAKFMLAQAALETGWGKKEI+TRDGRSAHNLFGIKATGNWTGKVV
Sbjct: 181 RLQADAEIASKMTGIPAKFMLAQAALETGWGKKEIITRDGRSAHNLFGIKATGNWTGKVV 240

Query: 240 EATTIEYINGKPQKRVEKFRAYDSYADAFKDYANLLRSNPRYEKVLASAQDAHGFAYGLQ 299
           EATTIEYINGKPQKRVEKFRAYDSYADAFKDYANLLRSNPRYEKVLASAQDAHGFAYGLQ
Sbjct: 241 EATTIEYINGKPQKRVEKFRAYDSYADAFKDYANLLRSNPRYEKVLASAQDAHGFAYGLQ 300

Query: 300 RAGYATDPHYAEKLSRIIRQSLSA 323
           RAGYATDPHYAEKLSRIIRQSLSA
Sbjct: 301 RAGYATDPHYAEKLSRIIRQSLSA 324


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.128    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 951,390
Number of extensions: 37567
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,217,395
Effective search space: 289740010
Effective search space used: 289740010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 131 (55.1 bits)