BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0444.p
         (773 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311358|ref|YP_003775450.1| flagellar hook-associated FlgK ...  1161   0.0  

>gi|300311358|ref|YP_003775450.1| flagellar hook-associated FlgK
           protein [Herbaspirillum seropedicae SmR1]
          Length = 778

 Score = 1161 bits (3003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/777 (85%), Positives = 716/777 (92%), Gaps = 5/777 (0%)

Query: 1   MATNIFSIGQSALQAAMAAQATTSHNISNATTPGYNRQEVVQSSAGGINYGYGFVGQGTQ 60
           MATNIFSIGQSALQAAMAAQATTSHNISN  TPGYNRQEVVQSSAGGINYGYGFVGQGTQ
Sbjct: 1   MATNIFSIGQSALQAAMAAQATTSHNISNGKTPGYNRQEVVQSSAGGINYGYGFVGQGTQ 60

Query: 61  VTEIKRIYNDFLTKQALASQSSASSLDSYYSQISQINNMVADTKAGLSPALQDFFAAVQN 120
           V EIKR+YNDFL KQALASQ+SASSLDSYYS+ISQINNMVADTKAGLSPALQDFF+AVQN
Sbjct: 61  VNEIKRVYNDFLNKQALASQTSASSLDSYYSEISQINNMVADTKAGLSPALQDFFSAVQN 120

Query: 121 LASNPNTQASRQSVLSQASTLVARVSSINDQLAQSSASVNSQITSTVTSINSYAQQIAKL 180
           LASNPNTQASRQSVLSQASTLVAR+SSINDQL+ SSASVNSQITSTVTSINS+AQQI++L
Sbjct: 121 LASNPNTQASRQSVLSQASTLVARISSINDQLSSSSASVNSQITSTVTSINSFAQQISQL 180

Query: 181 NQAIVNANGTGGGQPPNDLLDQRDQLVSELNKYVKITTVPQDTGAVSVFIGTGQALVTGD 240
           NQAIV A GTGGGQPPNDLLDQRDQ++S+LNK VKITTVPQDTG+VSVFIGTGQ+LV GD
Sbjct: 181 NQAIVKAIGTGGGQPPNDLLDQRDQVISQLNKLVKITTVPQDTGSVSVFIGTGQSLVAGD 240

Query: 241 QITQMVVTNSPTDVSRLQIGQVTAGGGTVTIPDSFFYDGGSLGGLLKYRTETLDPTQNAL 300
            +TQMVVTNSPTDVSRLQIGQ   GGGT TIPDSFFYDGGSLGGLLKYR+ETLDPTQNAL
Sbjct: 241 NVTQMVVTNSPTDVSRLQIGQAIPGGGTSTIPDSFFYDGGSLGGLLKYRSETLDPTQNAL 300

Query: 301 GRIAIAMGTAFNQQQQLGLDQNGNAGTAMFNVSSPNLIGFPGNTGTTNLTATISDPSALS 360
           GRIAIAMGTAFNQQQ+LGLDQNGN GTA+FNVSSPNLIG+PGNTGTTNLT TI+DPSAL+
Sbjct: 301 GRIAIAMGTAFNQQQKLGLDQNGNQGTALFNVSSPNLIGYPGNTGTTNLTTTITDPSALT 360

Query: 361 TSDYTLSYDGTNYTFTRLSDNTKTVKAATAFPVTLDGVTYSNGATPGG--APTMASGNTY 418
           TSDYTLSYDGTNYTFTRLSDNTKT+KA  AFPVTLDGVTYSNGA   G  APTMA+GNTY
Sbjct: 361 TSDYTLSYDGTNYTFTRLSDNTKTIKAPGAFPVTLDGVTYSNGAAAPGPFAPTMAAGNTY 420

Query: 419 KIQPTANGAAAFSLALNNTQLLATAAPITTAINATNNVNASTPGTNTGNAIISNTSLDPT 478
           KIQPTANGAA FSLALNNTQLLATAAPI T+INATNNVNAS P +NTGNAIISNTSLD +
Sbjct: 421 KIQPTANGAAGFSLALNNTQLLATAAPIATSINATNNVNASMPASNTGNAIISNTSLDSS 480

Query: 479 TFKQGSSVAFTASLSGT---QVQLTAAWTGATPAPAVTYTNPDGTTGSVAAGTAFNYTPG 535
            ++QGSSV+FTA+L  +   ++QL+AAWTGA P P VT    DGTT SV   T F+Y  G
Sbjct: 481 QYQQGSSVSFTAALDASTPPKMQLSAAWTGAAPVPGVTVNYADGTTASVTGATPFDYKSG 540

Query: 536 MTISSGGVTYSLTGTPSAGDKFNFAPVAANKGTATINTGSVTAAYLTTTTPLTKPTTLTY 595
           MTI+SGGVTY+LTG+P+AGDKFNFAPV+ANKGTATI+TGSVT AYLTTTTPLTKPTTLTY
Sbjct: 541 MTITSGGVTYALTGSPAAGDKFNFAPVSANKGTATISTGSVTPAYLTTTTPLTKPTTLTY 600

Query: 596 NTAATPPAFTISPAVPAGGGTITHQDGTTTAIAGGATSLAYTAGDTYEISGVKFKISGQP 655
           N+ A PP F ISPAVPAGGGTITH+DGTTT IAGGAT+L+YTAGD+YEISGV+F ISGQP
Sbjct: 601 NSTAAPPVFNISPAVPAGGGTITHKDGTTTTIAGGATTLSYTAGDSYEISGVQFAISGQP 660

Query: 656 SNGDQFTIAANTSAASDNRNALAMANLQTANTINGTSFQGSYSQLVATIGNKTNEINVTN 715
            NGDQFTIAANT+AASDNRNALAM  LQTANTINGTSFQGSYSQLVATIGNKTNEINVTN
Sbjct: 661 GNGDQFTIAANTNAASDNRNALAMGKLQTANTINGTSFQGSYSQLVATIGNKTNEINVTN 720

Query: 716 TAEKTRLTAIQAQQQSESGVNQDEELAQMIKNQQQYQAAAKIIQAASDMINVLLTLG 772
           TAEK RLTAIQ QQQSESGVNQDEELA MI+NQQQYQAAAKIIQAASDMINVLL+LG
Sbjct: 721 TAEKARLTAIQNQQQSESGVNQDEELAHMIQNQQQYQAAAKIIQAASDMINVLLSLG 777


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.308    0.122    0.331 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,889,053
Number of extensions: 67370
Number of successful extensions: 295
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 1
Length of query: 773
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 680
Effective length of database: 1,179,515
Effective search space: 802070200
Effective search space used: 802070200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 134 (56.2 bits)