BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0036.0443.p
         (377 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311359|ref|YP_003775451.1| flagellar hook-filament junctio...   657   0.0  

>gi|300311359|ref|YP_003775451.1| flagellar hook-filament junction
           protein [Herbaspirillum seropedicae SmR1]
          Length = 377

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/377 (86%), Positives = 352/377 (93%)

Query: 1   MRISTQMLYQSSNNDLTSMQSQILKLTQQVTAQQKVLLPSDDPVAAARALDMTQTSALND 60
           MRISTQM+YQSSNNDLTSMQSQ LKL+QQVTAQQ+VLLPSDDPVAAARALDM QT+ LN+
Sbjct: 1   MRISTQMIYQSSNNDLTSMQSQFLKLSQQVTAQQRVLLPSDDPVAAARALDMQQTADLNE 60

Query: 61  QYKTNRQNANSALSTVQGTLDSLTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLNE 120
           QYKTNRQNANSALS+VQG L+S+TNMLTKLKSNVITAGNASYSNAERINMASEIKGNL E
Sbjct: 61  QYKTNRQNANSALSSVQGNLESMTNMLTKLKSNVITAGNASYSNAERINMASEIKGNLAE 120

Query: 121 VLGYANAQDGQGNYIFSGFKSTTQPFTLDGTGGVVYNGDQGAMTLQVDSTRQMDISASGQ 180
           VLGYANAQDGQGNY+F+GFKSTTQPFTLDGTGGVVYNGDQGAM+LQVDSTR MDISASGQ
Sbjct: 121 VLGYANAQDGQGNYLFAGFKSTTQPFTLDGTGGVVYNGDQGAMSLQVDSTRVMDISASGQ 180

Query: 181 TVFQGNGQDIFKTMTNLINVLSVPVTEAANKADDTAANNYVYPAGSGQTPIAAYKAAQAT 240
            +FQGNGQDIFKTM N INVLSVPVTEAANKAD+TAANN+VYPAGSG TPIAAYK + A 
Sbjct: 181 AIFQGNGQDIFKTMNNFINVLSVPVTEAANKADETAANNFVYPAGSGLTPIAAYKTSLAQ 240

Query: 241 LDAMKPDDPGYQAQFTSTAALKLQSDAANAARTPVVGSQAALARNLAQFNTQIDSISSSV 300
           L+A+ P DP YQA FT+TAALKLQSDAA+AARTPVVGSQAAL RNLA FNTQIDS+ S+V
Sbjct: 241 LNALSPTDPTYQAVFTATAALKLQSDAADAARTPVVGSQAALTRNLASFNTQIDSLLSNV 300

Query: 301 STVKASIGARQNELDNLDAAGEVNKENYTQTINNLLGRNLSDTSELISDLTLKQTYLSAA 360
           +T KASIGARQNELDNLDAAGEVNKENYTQTINNLLGRN SD ++LISD TL QTYLSAA
Sbjct: 301 TTAKASIGARQNELDNLDAAGEVNKENYTQTINNLLGRNPSDVNQLISDYTLTQTYLSAA 360

Query: 361 QKVFVTTSGLTLLNYLK 377
           QKVFVTTSGL+LLNYLK
Sbjct: 361 QKVFVTTSGLSLLNYLK 377


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.309    0.122    0.320 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 935,122
Number of extensions: 34797
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 290
Effective length of database: 1,207,925
Effective search space: 350298250
Effective search space used: 350298250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 131 (55.1 bits)